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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00013567-protein ID=TCONS_00013567-protein|Name=TCONS_00013567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2219bp
MDSWQRNLRATSSSSNLKDERGAKRKSKPKTKAGVKDALLEPNQKDDERS
RHKSSSSYEISKVKAISDDKLHKRQSIRKTVSHEVLNRKSDSTKRRVKTL
STERRLLKPETQYPSVPDVRIKKTPSVENFRGTLKNKKKSRSEMKLSSSS
KDENMEIEEEDKVHTIMKSLADTQKKTQAKVFKSWLNYNLKLIQSSVLVK
DLFHDLRNGVILVKIVGYFSKEKQFIEKGNNRIHHVNNVNTVLKYLRLKK
VKLVNIHADAIVDGNKTITLALLWAIINVFQAGIFAAVEGDKGDKAIADM
SNKKKISLKQNLLQQCTSILKSYGLQEELKDFGSNSSFGDIFGKLIAFYR
PDLVCVEELQNMSQEEKIKDILQIAENILEVPTSLVIKDFTSEKPDERSV
MTFTSMLLQTLQNSKNSRSSFSSDEESTDESIADETEIKAKETQINLSND
LIEEKLNLTNSKIDEVLNELNTLDEKGKVSFSTILKHSLCYHITSSTTIK
CPVLSSKLKYLKEKVAYGTHLLNDSPLPSTFQNSLNPLLVEVHERLDDIG
IILKTTDLENNHIDQLKDLQVQSGIITSLKNSLKQLDEQDDIVKGKIKSL
STTLDDLDLTVTKTSHKILFSHYEHRIELFCERSRKVLQKQSPPFNCGKD
LRTKIQKLEKWFFKRNFSERFQRRLKRVTKTGEKFIQENSGDEFCQIISG
SIEKFELFYADHLSKASECMKEMKKTLDESNRCSGTFRDWKSTFENLDDL
IGIDLIPENIANDISSCKISIDNMQQFLTEHSKEFIPEFCHKFQVDITLL
QSRLDFVENYHKEVSSLSETVITTELANNTLSSCHQCLQEADKILSKPID
TSAFSLAERHLLDLQETKLYLGNTASYTKVLLALSSNSNEDQQDFVERLV
EINNHVHQKLESINEEIVRLKNMLPRWKDLNMGLTRARDWLDSVSSLTLE
FDEFDGSLSELVQKYSALMAKAKEVSKNGELIKTINEKVKKLQQSQNMEI
IELEELDDKCQEQNSKLRERLLKFTGHDEDLLKDLCTSMQIYTEVIDCAS
NLITDSHLEEIPMMHKSLKDELSKLKETNIPINLISVEISKIDTLEKGFC
DRLCKRFEGELGVVNNGISKAQDELALVGETFYQKSTSPHQSMVQIHNLQ
VSTHYKRVSRIIGELQNAFDLLEHFEYPSHNELKKSVEKFERVECEITFY
QDQIRPSLAVENETYEGLEAFAEWLETIEDVVTSVERAENNELFEEALTC
LQDLETDIPLQDELLEHLQNSYTTLSQKWKVDEICHDIQNSQQRFTTLKQ
DIQQLATHLPELKQSFQDLPKLLEALAWVQEMFVLVERNIEIDMREDVEK
EMERLQLLSNQVEKQKSNIEDVLAEAELKTHEQIVSHVYKESFTKLKELW
AKLLACLEERLTEMEGCKEQWLCFSFELEQIMNDLADGEMEFSKSKNKLY
FNADSIEEEIKKNKDLIKHLDDESHRIDDMTLLGEDLQEKLSKSGSLNVS
VKLTNIDSLKKSLKDDVNLQLEELNNSLTKWKRFSDSRDAFTEWLAGFQR
NSENYFQKDIKLSTPDDLKKMTNEVVTKHGLLEDLNKYCSELLENKQEKD
AVEIKKQVCKLNEQWDHIYNELKLREKSAQSVLTLWYSYEERVKGMKTYL
EEIAKRMSDIEVASNEKELDDKIRFIKDLSKEMKDKRSTLEELIWKGSQM
PLKFNFVNRQTICREIKDLDHSWKSNELELHHLEDKYSRLLKDLLAIEDL
VKDLDEWTCHCDGLNDEFEKFYLDKMMDGLLDYETKLQTIMSELPEKKDI
LQQLSITALKFEIESRGVYKMQPTFSKELKSIKNSINFLEKHGAERLASL
HDDISNWKIFIHKVDDMLEYLESKDNVLVETQPKDAIEMERRRLFLEDLQ
RDLECHQQDFQDIMTSSSKRKGSTHTDDELAIKINTITKKWHQLSTYISQ
QYQVLSLSLHFTEASENIMNYLVNIEEKLKSDIPDELKAKIHEENQKAKA
VVNDLQSRIESLQSYEFGNPFEVLPEDQSKNEESVFCENTECQNTISESE
NQSKSIKLDNETPQLMPGKEPYMLPDSDFEESSLTQQPTFEDNLMRLNME
WNETVQGIERMCLENHQTTNKWYDFTRLKKKVVRWIEKKEGDVKDEEALD
ATNKNFDSIVKNLDKYKDLKERVSLHKRDIDILLKKASSLSTDLSLSSIQ
ERFSNLEDEVTERDHYYSG Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1896..1916 |
| None | No IPR available | COILS | Coil | Coil | coord: 1676..1696 |
| None | No IPR available | COILS | Coil | Coil | coord: 1345..1379 |
| None | No IPR available | COILS | Coil | Coil | coord: 1000..1020 |
| None | No IPR available | COILS | Coil | Coil | coord: 1988..2015 |
| None | No IPR available | COILS | Coil | Coil | coord: 449..476 |
| None | No IPR available | COILS | Coil | Coil | coord: 958..978 |
| None | No IPR available | COILS | Coil | Coil | coord: 903..923 |
| None | No IPR available | COILS | Coil | Coil | coord: 2166..2186 |
| None | No IPR available | COILS | Coil | Coil | coord: 1453..1473 |
| None | No IPR available | GENE3D | 1.20.120.330 | | coord: 414..847
e-value: 0.0097
score: 15.0 |
| None | No IPR available | GENE3D | 1.20.58.60 | | coord: 1212..1322
e-value: 6.4E-4
score: 19.2
coord: 1323..1442
e-value: 8.6E-5
score: 22.0
coord: 1649..1765
e-value: 5.0E-7
score: 29.2
coord: 1565..1648
e-value: 5.8E-8
score: 32.3
coord: 1443..1551
e-value: 1.6E-7
score: 30.8
coord: 1766..1866
e-value: 0.0033
score: 16.9
coord: 1985..2132
e-value: 0.39
score: 10.2 |
| None | No IPR available | GENE3D | 1.20.58.60 | | coord: 925..1027
e-value: 0.018
score: 14.6
coord: 2133..2215
e-value: 1.8E-4
score: 21.0 |
| None | No IPR available | GENE3D | 1.20.58.60 | | coord: 1867..1963
e-value: 2.0E-4
score: 20.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 134..158 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 415..436 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..99 |
| None | No IPR available | SUPERFAMILY | 46966 | Spectrin repeat | coord: 884..1021 |
| None | No IPR available | SUPERFAMILY | 46966 | Spectrin repeat | coord: 1485..1627 |
| None | No IPR available | SUPERFAMILY | 46966 | Spectrin repeat | coord: 1582..1724 |
| None | No IPR available | SUPERFAMILY | 46966 | Spectrin repeat | coord: 1386..1514 |
| None | No IPR available | SUPERFAMILY | 46966 | Spectrin repeat | coord: 1217..1317 |
| None | No IPR available | SUPERFAMILY | 46966 | Spectrin repeat | coord: 2087..2213 |
| None | No IPR available | SUPERFAMILY | 46966 | Spectrin repeat | coord: 1823..1955 |
| IPR018159 | Spectrin/alpha-actinin | SMART | SM00150 | SPEC_4 | coord: 1422..1525
e-value: 0.44
score: 14.3
coord: 1858..1956
e-value: 2.4
score: 6.1
coord: 1637..1742
e-value: 1.2
score: 9.6
coord: 1532..1630
e-value: 3.4
score: 4.5 |
| IPR001715 | Calponin homology domain | SMART | SM00033 | ch_5 | coord: 178..279
e-value: 2.7E-11
score: 53.5 |
| IPR001715 | Calponin homology domain | PFAM | PF00307 | CH | coord: 177..281
e-value: 4.2E-15
score: 55.8 |
| IPR001715 | Calponin homology domain | GENE3D | 1.10.418.10 | | coord: 159..285
e-value: 8.2E-23
score: 80.2 |
| IPR001715 | Calponin homology domain | GENE3D | 1.10.418.10 | | coord: 300..413
e-value: 2.7E-9
score: 36.3 |
| IPR001715 | Calponin homology domain | PROSITE | PS50021 | CH | coord: 176..281
score: 14.169 |
| IPR001715 | Calponin homology domain | SUPERFAMILY | 47576 | Calponin-homology domain, CH-domain | coord: 150..408 |
| IPR001589 | Actinin-type actin-binding domain, conserved site | PROSITE | PS00020 | ACTININ_2 | coord: 253..277 |
| IPR001589 | Actinin-type actin-binding domain, conserved site | PROSITE | PS00019 | ACTININ_1 | coord: 178..187 |
Blast
BLAST of TCONS_00013567-protein vs. Swiss-Prot (Human)
Match: SYNE1 (Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=4) HSP 1 Score: 135.576 bits (340), Expect = 2.513e-31 Identity = 88/286 (30.77%), Postives = 144/286 (50.35%), Query Frame = 0
Query: 163 VHTIMKSLADTQKKTQAKVFKSWLNYNLKLIQSSVLVKDLFHDLRNGVILVKIVGYFSKEKQFIEKGNN--RIHHVNNVNTVLKYLRLKKVKLVNIHADAIVDGNKTITLALLWAIINVFQAGIFAA-------------VEGDKGDKAIADMSNKKKIS------LKQNLLQQCT-SILKSYGLQEELKDFGSNSSFGDIFGKLIAFYRPDLVCVEELQNMSQEEKIKDILQIAENILEVPTSLVIKDFTSEKPDERSVMTFTSMLLQTLQNSKNSRSSFSSDEE 426
+ +M+ L D Q+ Q + F W+N +L + ++V DLF D+++GV L+ ++ S +K E+G RIH V N+ T LK+L +K+KLVNI++ I DG +I L L+W II FQ + +K+K++ K+ LL+ + K G+ E+KDFG + G F +I RP+LV +E ++ S E ++D IAE L +P L +D +KPDE+S+MT+ + L+ + N+ + D+E
Sbjct: 14 IANVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRMKRIHAVANIGTALKFLEGRKIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLPQLQSLSSSASSVDSIVSSETPSPPSKRKVTTKIQGNAKKALLKWVQYTAGKQTGI--EVKDFGKSWRSGVAFHSVIHAIRPELVDLETVKGRSNRENLEDAFTIAETELGIPRLLDPEDVDVDKPDEKSIMTYVAQFLKHYPDIHNASTDGQEDDE 297
The following BLAST results are available for this feature:
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