TCONS_00013732-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013732-protein
Unique NameTCONS_00013732-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013732-protein ID=TCONS_00013732-protein|Name=TCONS_00013732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MSVSSIPSIPSIPSDEECEEIQLPPDAERLTECLTVLDTMLGSLEERLVK
TGITTSYKGVCAQCEEAIHGEVCTAFGKTWHPYHFLCEVCGNELWQQMFY
EREGKAYCEKDYTEKYSPKCEACKEIITDACIMENKRVWHLEHFKCSECK
QLIDTETGFHDHQEQIYCTGCYQRLFLPVCPVCKTYVHGIVMNGKFHQKC
FKCADCRHSLEGKNYYEHEGRIYCETHFRAKRRNICAKCNKLIIKSFITA
MGGKKFHPEHFTCSLCTFELNNGTYKEAKGRPYCEKCYLKTFMRY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007664XLOC_007664Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013732TCONS_00013732Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 60..111
e-value: 5.0E-14
score: 62.6
coord: 179..227
e-value: 1.6E-10
score: 51.0
coord: 119..171
e-value: 2.8E-12
score: 56.8
coord: 235..287
e-value: 6.2E-13
score: 59.0
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 61..115
e-value: 3.8E-13
score: 49.3
coord: 120..175
e-value: 1.0E-10
score: 41.6
coord: 236..292
e-value: 4.2E-15
score: 55.6
coord: 180..230
e-value: 2.2E-10
score: 40.5
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 236..270
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 120..153
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 59..118
score: 13.088
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 234..294
score: 12.702
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 119..178
score: 9.91
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 181..233
score: 6.594
NoneNo IPR availableGENE3D2.10.110.10coord: 59..120
e-value: 3.6E-18
score: 65.2
coord: 179..237
e-value: 2.3E-13
score: 49.8
NoneNo IPR availableGENE3D2.10.110.10coord: 121..178
e-value: 5.0E-16
score: 57.9
coord: 238..295
e-value: 4.4E-16
score: 58.1
NoneNo IPR availableCDDcd08368LIMcoord: 120..172
e-value: 2.78288E-7
score: 45.3863
NoneNo IPR availableCDDcd08368LIMcoord: 180..228
e-value: 2.47336E-8
score: 48.4679
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 261..292
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 57..85
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 202..266
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 145..204
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 87..150

Blast
[Close]
BLAST of TCONS_00013732-protein vs. Swiss-Prot (Human)
Match: PAXI (Paxillin OS=Homo sapiens GN=PXN PE=1 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 3.295e-72
Identity = 112/259 (43.24%), Postives = 154/259 (59.46%), Query Frame = 0 
Query:   37 LDTMLGSLEERLVKTGITTSYKGVCAQCEEAIHGEVCTAFGKTWHPYHFLCEVCGNELWQQMFYEREGKAYCEKDYTEKYSPKCEACKEIITDACIMENKRVWHLEHFKCSECKQLIDTETGFHDHQEQIYCTGCYQRLFLPVCPVCKTYV---HGIVMNGKFHQKCFKCADCRHSLEGKNYYEHEGRIYCETHFRAKRRNICAKCNKLIIKSFITAMGGKKFHPEHFTCSLCTFELNNGTYKEAKGRPYCEKCYLKTF 292
            LD+MLGSL+  L K G+ T  KGVC  C++ I G+V TA GKTWHP HF+C  C  E+  + F+ER+G+ YCEKDY   +SP+C  C   I D  +    R WH EHF C++C      E GFH+   + YC   Y  +F P C  C   +   +   +N  +H +CF C +C       +++EH+G+ YCE H+  +R ++C+ C K I    ITAM  KKFHPEHF C+ C  +LN GT+KE   +PYC+ C+LK F
Sbjct:  334 LDSMLGSLQSDLNKLGVATVAKGVCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPE-GFHEKDGKAYCRKDYFDMFAPKCGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAM-AKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFLKLF 590
The following BLAST results are available for this feature:
BLAST of TCONS_00013732-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAXI3.295e-7243.24Paxillin OS=Homo sapiens GN=PXN PE=1 SV=3[more]
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