TCONS_00013892-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00013892-protein
Unique NameTCONS_00013892-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length188

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00013892-protein ID=TCONS_00013892-protein|Name=TCONS_00013892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MLKQKLDDEHSNYKRKVQAYQDSQTRQATLIQKLQNKVLQYKRKNGEQDT
VLNERTLECDKLRTEVQKLNDSNKIYEERLKEDENDQNNNLEDSLIQLEE
QKQRNTSLQHVNDMLRDQLDQATTANSQLTVEAQRLDADWTKACQELEAR
EDEEERYFTEEHEKIISLWTSITSFRKNFQELKLETQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007754XLOC_007754Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00013892TCONS_00013892Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..23
NoneNo IPR availableCOILSCoilCoilcoord: 52..139
NoneNo IPR availablePFAMPF15035Rootletincoord: 14..187
e-value: 1.6E-38
score: 132.6

Blast
[Close]
BLAST of TCONS_00013892-protein vs. Swiss-Prot (Human)
Match: CROCC (Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.815e-38
Identity = 79/194 (40.72%), Postives = 126/194 (64.95%), Query Frame = 0 
Query:    2 LKQKLDDEHSNYKRKVQAYQDSQTRQATLIQKLQNKVLQYKRKNGEQDTVLNERTLECDKLRTEVQKLNDSNKIYEERLKEDENDQNNNLEDSLIQLEEQKQRNTSLQHVNDMLRDQLDQATTANSQLTVEAQRLDADWTKACQELEARED----EEER---YFTEEHEKIISLWTSITSFRKNFQELKLETQK 188
            L+++L +E ++Y+RK+QAYQ+ Q RQA L+Q+LQ K+LQYK++              C +L  E Q L  S ++ ++RL++ E+ Q+  LE +LI+LEE++QR+ SL  VN MLR+QLDQA +AN  L+ + +++  DWT+  +ELE RE     EEE    YF+ EH +++ LW  +  FR+   E+K+ T++
Sbjct:  144 LRRQLQEEQASYRRKLQAYQEGQQRQAQLVQRLQGKILQYKKR--------------CSEL--EQQLLERSGELEQQRLRDTEHSQD--LESALIRLEEEQQRSASLAQVNAMLREQLDQAGSANQALSEDIRKVTNDWTRCRKELEHREAAWRREEESFNAYFSNEHSRLLLLWRQVVGFRRLVSEVKMFTER 319
The following BLAST results are available for this feature:
BLAST of TCONS_00013892-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CROCC5.815e-3840.72Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1[more]
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