TCONS_00014248-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014248-protein
Unique NameTCONS_00014248-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014248-protein ID=TCONS_00014248-protein|Name=TCONS_00014248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MDRFYWYDGNLNGGNERQVHNTKNVRLYDGDDKTTFDSGLLTLTNLRIIW
SDEAQKDRKIALELDLVKKITSELGSMFKSAKTSIHLEAAPKDKPSGPKR
SSSHNVVRFSFRVGGQEQFTKELNQVIAAKEWEILKAASNQSKKTAELAP
RHVGIGGIERKMQEKYEQTDQSINQAFKDLDALIEKAKDMVVLAEKFSSK
LKDKQVSITDDETVAFKSYLLSMGIENPVTRETHGSGARYHEELAKQLST
FLSGFIEKEGGFITLTDVYCRFNRARGMELISPDDVFQAAQILEKMNLPV
RLRKFDSGVLVIQSVSHSEEEMIQKTYSQVEEAGSLSSEELSQLLNMALT
LARERLLLAEQSGKLCRDDSLEGLRFYPNKFVEMEST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007964XLOC_007964Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014248TCONS_00014248Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH_dom-like
IPR007286EAP30
IPR021648GLUE_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0043130ubiquitin binding
GO:0032266phosphatidylinositol-3-phosphate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0032266 phosphatidylinositol-3-phosphate binding
molecular_function GO:0043130 ubiquitin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH domain-likeGENE3D2.30.29.30coord: 12..134
e-value: 3.3E-5
score: 23.6
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 7..132
IPR007286EAP30PFAMPF04157EAP30coord: 153..369
e-value: 3.4E-41
score: 141.0
IPR021648Vacuolar protein sorting protein 36, GLUE domainPFAMPF11605Vps36_ESCRT-IIcoord: 15..88
e-value: 1.9E-15
score: 56.7
IPR021648Vacuolar protein sorting protein 36, GLUE domainPROSITEPS51495GLUEcoord: 1..139
score: 18.652
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 236..314
e-value: 3.6E-31
score: 106.5
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 318..382
e-value: 2.5E-16
score: 58.9
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 187..315
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 276..384

Blast
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BLAST of TCONS_00014248-protein vs. Swiss-Prot (Human)
Match: VPS36 (Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens GN=VPS36 PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 1.620e-129
Identity = 188/386 (48.70%), Postives = 269/386 (69.69%), Query Frame = 0 
Query:    1 MDRFYWYDGNLNGGNERQVHNTKNVRLYDGDDKTTFDSGLLTLTNLRIIWSDEAQKDRKIALELDLVKKITSELGSMFKSAKTSIHLEAAPKDKPSGPKRSSSHNVVRFSFRVGGQEQFTKELNQVIAAKEWEILKAA----SNQSKKTAELAPRHVGIGGIERKMQEKYEQTDQSINQAFKDLDALIEKAKDMVVLAEKFSSKLKDKQVSITDDETVAFKSYLLSMGIENPVTRETHGSGARYHEELAKQLSTFLSGFIEKEGGFITLTDVYCRFNRARGMELISPDDVFQAAQILEKMNLPVRLRKFDSGVLVIQSVSHSEEEMIQKTYSQVEEAGSLSSEELSQLLNMALTLARERLLLAEQSGKLCRDDSLEGLRFYPNKFV 382
            MDRF W  G L   NE  V   + VR+YDG++K  FD+G L L+  R+IW D+   +  +A+ L  +  I  +   + KSAK  +HL  AP +K  GP +SS ++ ++ SF+  GQ +F + L++ +  + WE +  +    +N+  +   +  R VGI GIERK++EK ++TD++I++AF+DL  L+ KAK+MV L++  ++K+KDKQ  IT+DET+ FKSYLLSMGI NPVTRET+GSG +YH +LAKQL+  L   +E+ GG ++LT+VYC  NRARGMEL+SP+D+  A ++LE + LP+RLR FDSGV+VI+  SH EEEM+      V E GSL+SEE ++L+ M++ LA+ERLLLAE+ G LCRDDS+EGLRFYPN F+
Sbjct:    1 MDRFVWTSGLLEI-NETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRRWENMPVSQSLQTNRGPQPGRI--RAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPNLFM 383
The following BLAST results are available for this feature:
BLAST of TCONS_00014248-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS361.620e-12948.70Vacuolar protein-sorting-associated protein 36 OS=... [more]
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