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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014248 ID=TCONS_00014248|Name=TCONS_00014248|organism=Clytia hemisphaerica|type=transcript|length=1643bpRun BLAST on NCBI protein sequence of TCONS_00014248-protein >TCONS_00014248-protein ID=TCONS_00014248-protein|Name=TCONS_00014248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp MDRFYWYDGNLNGGNERQVHNTKNVRLYDGDDKTTFDSGLLTLTNLRIIWRun BLAST on NCBI transcript from alignment at sc0000183:314868..321900- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014248 ID=TCONS_00014248|Name=TCONS_00014248|organism=Clytia hemisphaerica|type=transcript|length=7033bp|location=Sequence derived from alignment at sc0000183:314868..321900- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000183:314868..321900- >TCONS_00014248 ID=TCONS_00014248|Name=TCONS_00014248|organism=Clytia hemisphaerica|type=CDS|length=15132bp|location=Sequence derived from alignment at sc0000183:314868..321900- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014248 vs. Swiss-Prot (Human)
Match: VPS36 (Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens GN=VPS36 PE=1 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 8.367e-109 Identity = 188/386 (48.70%), Postives = 269/386 (69.69%), Query Frame = 2
Query: 122 MDRFYWYDGNLNGGNERQVHNTKNVRLYDGDDKTTFDSGLLTLTNLRIIWSDEAQKDRKIALELDLVKKITSELGSMFKSAKTSIHLEAAPKDKPSGPKRSSSHNVVRFSFRVGGQEQFTKELNQVIAAKEWEILKAA----SNQSKKTAELAPRHVGIGGIERKMQEKYEQTDQSINQAFKDLDALIEKAKDMVVLAEKFSSKLKDKQVSITDDETVAFKSYLLSMGIENPVTRETHGSGARYHEELAKQLSTFLSGFIEKEGGFITLTDVYCRFNRARGMELISPDDVFQAAQILEKMNLPVRLRKFDSGVLVIQSVSHSEEEMIQKTYSQVXXXXXXXXXXXXXXXNMXXXXXXXXXXXXXQSGKLCRDDSLEGLRFYPNKFV 1267
MDRF W G L NE V + VR+YDG++K FD+G L L+ R+IW D+ + +A+ L + I + + KSAK +HL AP +K GP +SS ++ ++ SF+ GQ +F + L++ + + WE + + +N+ + + R VGI GIERK++EK ++TD++I++AF+DL L+ KAK+MV L++ ++K+KDKQ IT+DET+ FKSYLLSMGI NPVTRET+GSG +YH +LAKQL+ L +E+ GG ++LT+VYC NRARGMEL+SP+D+ A ++LE + LP+RLR FDSGV+VI+ SH EEEM+ V E GSL+SEE ++L+ M++ LA+ERLLLAE+ G LCRDDS+EGLRFYPN F+
Sbjct: 1 MDRFVWTSGLLEI-NETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRRWENMPVSQSLQTNRGPQPGRI--RAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPNLFM 383 The following BLAST results are available for this feature:
BLAST of TCONS_00014248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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