TCONS_00014255-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014255-protein
Unique Name	TCONS_00014255-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	366

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014255-protein ID=TCONS_00014255-protein|Name=TCONS_00014255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MGEQDEVSVEVQITLYATIGAVSLVCNSLIFLVIGTNKDMRTKSNWLLIS
LATTDWLIIVTGIPIHLINLIKGGNQTHGMVCDLFGFLILVPFLVSNFNL
TLIAVHRYVLVVRNKSYRKIFTDKRLFMSIALVWGIGILLSIPPLLGWGS
FSYNANRAHCMIDWQKSLSYLIVLQLMAYPVPMATMCFCYYKILRHSYES
SKRLASSGDKHRIAKKKREVRLSIMLLLVLLCFFLLFFPYAIMIIYEGQI
GGTPSHTFSFISMLGAYSNSMVDFWIYAAMSTKFRQALKRLFYRIAGKLD
LSPTATDSSSDAGHSTSTTKVKHQPVPTKPTEGAEQETSINLFLPRGKIN
PDSVEESCDRSCIDKP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007968	XLOC_007968	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014255	TCONS_00014255	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 125..146 score: 25.62 coord: 171..194 score: 22.02 coord: 222..246 score: 22.45 coord: 44..65 score: 27.92 coord: 89..111 score: 28.84 coord: 11..35 score: 22.69 coord: 259..285 score: 25.95
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 27..277 e-value: 2.4E-39 score: 135.1
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 95..111
None	No IPR available	GENE3D	1.20.1070.10		coord: 3..336 e-value: 1.2E-69 score: 234.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 303..366
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 11..297
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 26..277 score: 32.267

Blast

[Close]

BLAST of TCONS_00014255-protein vs. Swiss-Prot (Human)
Match: HRH2 (Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.813e-24
Identity = 84/333 (25.23%), Postives = 160/333 (48.05%), Query Frame = 0

Query:    5 DEVSVEVQITLY-ATIGAVSLVCNSLIFLVIGTNKDMRTKSNWLLISLATTDWLIIVTGIPIHLINLIKGGNQTHGMVCDLFGFLILVPFLVSNFNLTLIAVHRYVLVVRNKSYRKIFTDKRLFMSIALVWGIGILLSIPPL-LGWGSFSYNANRAH----CMIDWQKSLSYLIVLQLMAYPVPMATMCFCYYKILRHSYESSKRLASSGDKHRIAKKKREVRLSIMLLLVLLCFFLLFFPYAIMIIYEGQIGGTP-SHTFSFISMLGAYSNSMVDFWIYAAMSTKFRQALKRLF-YRIAGKLDLSPTATDSSSDAGHSTSTTKVKHQPVPTK 329
            D  + ++ IT+  A +  +++  N ++ L +G N+ +R  +N  ++SLA TD L+ +  +P   I  +        + C+++  L ++    S  NL +I++ RY  V+    Y  + T  R+ +S+ L+W I I LS   + LGW S +  +   H    C +  Q +  Y +V  L+ + +P+  MC  YY+I + + + +KR+         A   RE + ++ L  V+  F + +FPY    +Y G  G    +     I +   Y+NS ++  +YAA++  FR   ++LF  R+A +     +   ++S    + S    + +  P K
Sbjct:   13 DSTACKITITVVLAVLILITVAGNVVVCLAVGLNRRLRNLTNCFIVSLAITDLLLGLLVLPFSAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNETSKGNHTTSKCKV--QVNEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWK--AATIREHKATVTLAAVMGAFIICWFPYFTAFVYRGLRGDDAINEVLEAIVLWLGYANSALNPILYAALNRDFRTGYQQLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLK 341

The following BLAST results are available for this feature:

BLAST of TCONS_00014255-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014255-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HRH2	1.813e-24	25.23	Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2...	[more]

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TCONS_00014255-protein (polypeptide) - C. hemisphaerica