TCONS_00014474-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014474-protein
Unique NameTCONS_00014474-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014474-protein ID=TCONS_00014474-protein|Name=TCONS_00014474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp
MEKVLSKKSNYFVLNNDEVGGHPIIREMADEKKKLLASPDDDLGYKNKGI
ISNDEEHDLSFALKIIKEQGDLLKTMQNDMDEQRSLNAKLSSKLEDLTRD
IQILNDSHSKETIKKDEQIDKLKNTLEAKTEFQASLIDELRYQIQSMRNK
MDSKRLTENGTSSGKAIVKHNEILSPTKKLLRNNSEDSISSNGSNPCLLS
RTIGPQRAEYVWRINAFTKKLKRIQSNSYDDPSRSEPFVTGPNGYRLSMW
AYLNGRGKGFDKCLAVYVRIMAGEYDPVLPWPIKPCYTFQLISQAQDPNK
RLDLVRVRDLSVKHSGISRPQKDDKSIIVGFDDFIVHEDLEKKEYLADDS
LFIKCIVEI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008098XLOC_008098Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014474TCONS_00014474Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..157
NoneNo IPR availableCOILSCoilCoilcoord: 73..107
NoneNo IPR availableGENE3D1.20.1170.10coord: 26..220
e-value: 6.0E-4
score: 18.3
IPR008974TRAF-likeGENE3D2.60.210.10coord: 221..359
e-value: 4.8E-26
score: 91.5
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 210..359
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 207..357
score: 17.578

Blast
[Close]
BLAST of TCONS_00014474-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.176e-17
Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = 0 
Query:  211 VWRINAFTKKLKRIQSNSYDDPSRSEPFVTGPNGYRLSMWAYLNGRGKGFDKCLAVYVRIMAGEYDPVLPWPIKPCYTFQLISQAQDPNKRLDLVRVRDLS-----------VKHSGISRPQKDDKSIIVGFDDFIVHEDLEKKEYLADDSLFIKCIVEI 359
            +W+I ++ ++L+  ++    +   S  F T   GY+L + A+LNG G G    L++Y+R++ G +D +L WP     TF L+ Q+ DP     L + + ++            +  G  R   D+ S+  G+  FI H+D+ K+ Y+ DD++FI+  VE+
Sbjct:  311 IWKIGSYGRRLQEAKAKPNLE-CFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQS-DPG----LAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVEL 464
The following BLAST results are available for this feature:
BLAST of TCONS_00014474-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF44.176e-1729.38TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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