TCONS_00014475-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014475-protein
Unique Name	TCONS_00014475-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	583

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014475-protein ID=TCONS_00014475-protein|Name=TCONS_00014475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
MNRNWAVARVAFNTATDKDLELVDKEDGTSQSRQENGEVKPSTQRTNGNL
ASAASIFNKKDSTTDTHPAGTNKTANGDTQRARDRFRQAGMKARLARRME
KIAEDRMTISQIFNRYVDNSTLHGFRFIFMKTFYVRRFLWFALTCGMACL
FFMELEKSIALFYQYPFTTLSTIEYVPQLKFPAISLCNLNNYQVSKIRKS
KLKGLYEKGLFPFHGEPFDPGFELTGEELLQNMKASSQSIDYILKGCEWK
SRDTAKTGKPNFCGAMNFTRFSNLEGQTCYTFNSGINSDILTLNETGLNM
AFKLELDLQVKDSVQSLEEVGVNIVIHDQDETPLHHAGFIVSPGFQTFVE
MKVKKTENLKPPYATKCGSMNLKYTDDYRQSQCFIEQLNNEVIHHCGCRG
EFMKEPSDVPYCTMNETIHCLLPTIHHFDRKTSQSCPVDCETVQYTTALS
YGRFLSSPPIGTNLVRNGSTAYINELKKTMDSSELRKYIEENIVVVQFFY
QEMKEENVIQEPSYDFYKLVGDVGGQLGLMLGASVLTLVEFVDLFLFTLY
HQLLRLSRKKKKESEVKEANNNNSNGTTKLMDT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008099	XLOC_008099	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014475	TCONS_00014475	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 436..456 score: 26.86 coord: 267..283 score: 39.06 coord: 350..366 score: 22.82 coord: 177..193 score: 44.24 coord: 490..510 score: 16.95 coord: 524..540 score: 55.76 coord: 321..339 score: 29.26 coord: 510..524 score: 24.8 coord: 137..154 score: 24.44
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 116..544 e-value: 1.9E-73 score: 247.8
None	No IPR available	GENE3D	1.10.287.770		coord: 499..552 e-value: 1.2E-17 score: 63.2
None	No IPR available	GENE3D	2.60.470.10		coord: 411..498 e-value: 0.0036 score: 16.5 coord: 167..408 e-value: 1.1E-37 score: 129.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 562..583

Blast

[Close]

BLAST of TCONS_00014475-protein vs. Swiss-Prot (Human)
Match: ASIC3 (Acid-sensing ion channel 3 OS=Homo sapiens GN=ASIC3 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 8.815e-52
Identity = 138/478 (28.87%), Postives = 222/478 (46.44%), Query Frame = 0

Query:  104 EDRMTISQIFNRYVDNSTLHGFRFIFMK-TFYVRRFLWFALTCGMACLFFMELEKSIALFYQYPFTTLSTIEYVPQLKFPAISLCNLNNYQVSKIRKSKL--KGLYEKGLFP---------FHGEPFDPGFELTGE-ELLQNMKASSQSIDYILKGCEWKSRDTAKTGKPNFCGAMNFTRFSNLEGQTCYTFNSGIN-SDILTLNETGLNMAFKLELDLQ-------VKDSVQSLEEVGVNIVIHDQDETPL-HHAGFIVSPGFQTFVEMKVKKTENLKPPYA-TKCGSMNLKYTDD---------------YRQSQCFIEQLNNEVIHHCGCRGEFMKEPSDVPYCTMNETIHCLLPTIHHFDRKTSQSCPVDCETVQYTTALSYGRFLSSPPIGTNLVRNGSTAYINELKKTMDSSELRKYIEENIVVVQFFYQEMKEENVIQEPSYDFYKLVGDVGGQLGLMLGASVLTLVEFVD 543
            E R   S I   +  N ++HG   +F   +  +RR +W A        F  ++ + +  + ++   T        +L FPA++LCN+N  + S++  + L   G    GL P             P  PGF  +   ++ Q    +  S+D +L  C ++       G+P  CG  NFT      G+ CYTFNSG + +++LT    G+     + LD+Q        +D+ ++  EVG+ + IH Q+E P+    G  VSPG+QTFV  + ++   L PP+      S+N  Y  +               Y    C +      V   CGCR  +M  P DVP C+  +  +C  P I    RK S +CP  C + +Y   LS             +VR  S A    L + ++ SE   YI EN++ +  F++ +  E V Q+ +Y+  +L+GD+GGQ+GL +GAS+LT++E +D
Sbjct:    9 EARRPASDI-RVFASNCSMHGLGHVFGPGSLSLRRGMWAAAVVLSVATFLYQVAERVRYYREFHHQTALDERESHRLIFPAVTLCNINPLRRSRLTPNDLHWAGSALLGLDPAEHAAFLRALGRPPAPPGFMPSPTFDMAQLYARAGHSLDDMLLDCRFR-------GQP--CGPENFTTIFTRMGK-CYTFNSGADGAELLTTTRGGMGNGLDIMLDVQQEEYLPVWRDNEETPFEVGIRVQIHSQEEPPIIDQLGLGVSPGYQTFVSCQQQQLSFLPPPWGDCSSASLNPNYEPEPSDPLGSPSPSPSPPYTLMGCRLACETRYVARKCGCRMVYM--PGDVPVCSPQQYKNCAHPAIDAMLRKDSCACPNPCASTRYAKELS-------------MVRIPSRAAARFLARKLNRSE--AYIAENVLALDIFFEALNYETVEQKKAYEMSELLGDIGGQMGLFIGASLLTILEILD 458

The following BLAST results are available for this feature:

BLAST of TCONS_00014475-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014475-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC3	8.815e-52	28.87	Acid-sensing ion channel 3 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00014475-protein (polypeptide) - C. hemisphaerica