TCONS_00014777-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014777-protein
Unique Name	TCONS_00014777-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	997

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014777-protein ID=TCONS_00014777-protein|Name=TCONS_00014777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=997bp
MHRGGTSPGRGRGGGPNRRGGRGGRGRGGGHPSGLSGKDIGLYYARRGKE
RKKIAEVENRSVVTLSKKEESHLTSLLREQECKMETEYVSDPFQEGASNT
SAAPNSFQAASSGPSSSTSVKIEPFNDGYSDVDYDSLLQQFDGVFKDEEK
AKVKVEHAWQNSKTNLSGTHYCSLETDDEMEQFLKDDLKTKFQSQKFNQM
LEFRKKLPSYQMRKEIMGTIAENQVCVIDGQTGCGKTTQVAQFILEDCIE
KGRGSGCHIICTQPRRISAVSVAERVASERNEALGKSCGYQIRLDCKLPR
DRGSILYCTTGILLQRLVSDPYMLNITHIILDEIHERDIMSDFLLIIIKD
VIPHRPDLKVILMSATLNAEEFSQYFGNCPMLHIPGFTFPVQEHYLEDTL
SMINYRVHMRAQQPQKIFHGKQRYEQQRERDQLVDYLYSIENKYAPDVLE
TIENMDFKQIDVSLVAQLIQHICSNFDDGAVLVFLPGWGDITKLHDLLMK
NPVFRSDRFVVIPLHSMLPTASQKQIFETPPVGVRKIVIATNIAETSITI
PDVVYVINGGKTKVQAYDVDVNVSSLMPQWGSKASARQRRGRAGRVKAGV
CFHLFTQYHWDNFADYTLPEILRTPLESLCLQIKQLRLGRVEEFLSKAMQ
SPEQKAIENAIKSLKQMGAFDDHEELTALGYHLARLPVVPRVGRMILFGA
IFSCLDPVLTIAGSLDFKEPFYIPLHKEREADEKRRELAKRSQSDYIMLV
NAFKGWEDAKRHQNAREYCWRYFLSESTLRMIENMKKQFAQLLYDIGFLS
SPQVKDPKANCFSNNTKLVKAVMCAGLYPHVIKIVPPHNQYKKPNQPSRP
PKLYTEQYGRVKIHPKSVNEKETNYESLWMVYHKIMKSTSLFVHDCSVVT
PFALLFFGGTITFKQEEGMDTICVDDIIKFHSPLKIANLVKRLRVELDGL
LSKKITTPSVELFAGGRDKSRDHHILTAIIDLITTETVKAKSASGYK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008270	XLOC_008270	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014777	TCONS_00014777	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C
IPR007502	Helicase-assoc_dom
IPR011545	DEAD/DEAH_box_helicase_dom
IPR011709	DUF1605
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0004386	helicase activity
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 205..394 e-value: 2.4E-29 score: 113.5
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 217..385 score: 20.437
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 492..597 e-value: 5.4E-16 score: 69.1
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 468..596 e-value: 7.0E-15 score: 55.3
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 467..637 score: 15.12
IPR007502	Helicase-associated domain	SMART	SM00847	ha2_5	coord: 659..750 e-value: 1.5E-26 score: 104.2
IPR007502	Helicase-associated domain	PFAM	PF04408	HA2	coord: 660..744 e-value: 5.5E-17 score: 61.9
None	No IPR available	GENE3D	3.40.50.300		coord: 206..370 e-value: 4.5E-30 score: 104.1
None	No IPR available	GENE3D	3.40.50.300		coord: 388..618 e-value: 1.3E-46 score: 157.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..124
None	No IPR available	CDD	cd00046	DEXDc	coord: 224..367 e-value: 8.32749E-26 score: 103.956
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 213..370 e-value: 6.3E-10 score: 39.0
IPR011709	Domain of unknown function DUF1605	PFAM	PF07717	OB_NTP_bind	coord: 819..911 e-value: 1.1E-15 score: 57.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 454..758 coord: 205..399

Blast

[Close]

BLAST of TCONS_00014777-protein vs. Swiss-Prot (Human)
Match: DHX36 (ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2)

HSP 1 Score: 914.064 bits (2361), Expect = 0.000e+0
Identity = 462/964 (47.93%), Postives = 654/964 (67.84%), Query Frame = 0

Query:   35 LSGKDIGLYYARRGKERKKIAEVENRSVVTLSKKEESHLTSLLREQECKMETEYVSDPFQEGASNTSAAPNSFQAASSGPSSSTSVKIEPFNDGYSDVDYDSLLQQFDGVFKDEEKAKVKVEHAWQNSKTNLSGTHYCSLETDDEMEQFLKDDLKTKFQSQKFNQMLEFRKKLPSYQMRKEIMGTIAENQVCVIDGQTGCGKTTQVAQFILEDCIEKGRGSGCHIICTQPRRISAVSVAERVASERNEALG--KSCGYQIRLDCKLPRDRGSILYCTTGILLQRLVSDPYMLNITHIILDEIHERDIMSDFLLIIIKDVIPHRPDLKVILMSATLNAEEFSQYFGNCPMLHIPGFTFPVQEHYLEDTLSMINY---RVHMRAQQPQKIFHGKQRYEQQRERDQLV-----DYLYSIENKYAPDVLETIENMDFKQIDVSLVAQLIQHICSNFDDGAVLVFLPGWGDITKLHDLLMKNPVFRSDRFVVIPLHSMLPTASQKQIFETPPVGVRKIVIATNIAETSITIPDVVYVINGGKTKVQAYDVDVNVSSLMPQWGSKASARQRRGRAGRVKAGVCFHLFTQYHWDNFADYTLPEILRTPLESLCLQIKQLRLGRVEEFLSKAMQSPEQKAIENAIKSLKQMGAFDDHEELTALGYHLARLPVVPRVGRMILFGAIFSCLDPVLTIAGSLDFKEPFYIPLHKEREADEKRRELAKRSQSDYIMLVNAFKGWEDAKRH--QNAREYCWRYFLSESTLRMIENMKKQFAQLLYDIGFLSSPQVKDPKANCFSNNTKLVKAVMCAGLYPHVIKIVPPHNQYKKPNQPSRPPKLYTEQYGRVKIHPKSVNEKETNYESLWMVYHKIMKSTSLFVHDCSVVTPFALLFFGGTITFKQEEGMDTICVDDIIKFHSPLKIANLVKRLRVELDGLLSKKITTPSVELFAGGRDKSRDHHILTAIIDLITTE 986
            L G++IG++YA++  ++ K AE + R+VV + ++ E  +  LL   + K + E            + A  + F     G  +  S K  P ++   D+    L+ Q   +F+   ++ +  +  +   +    GT          ++Q L +DL+ K    ++ +M  FR+KLPSY M+KE++  I  +QV VI G+TGCGKTTQV QFIL++ IE+G+GS C I+CTQPRRISA+SVAERVA+ER E+ G   S GYQIRL  +LPR +GSILYCTTGI+LQ L SDPY+ +++HI+LDEIHER++ SD L+ ++KD++  R DLKVILMSATLNAE+FS+YFGNCPM+HIPGFTFPV E+ LED +  I Y   +   R+Q  +    G    +++ E++ +      DY+  +  +Y+   ++ IE M+  ++D++L+  LI++I    +DGA+LVFLPGW +I+ LHDLLM   +F+SD+F++IPLHS++PT +Q Q+F+  P GVRKIVIATNIAETSITI DVVYVI+GGK K   +D   N+S++  +W SKA+A+QR+GRAGRV+ G C+HL+         DY LPEILRTPLE LCLQIK LRLG +  FLS+ M  P  +A+  +I+ L ++ A D  EELT LG HLARLPV P +G+MILFGA+F CLDPVLTIA SL FK+PF IPL KE+ AD +R+ELAK ++SD++ +VNAF+GWE+A+R   +  ++YCW YFLS +TL+M+ NMK QFA+ L   GF+SS   KDP++N  S+N K++KAV+CAGLYP V KI     + +K        K+YT+  G V +HPKSVN ++T++   W++YH  M+++S++++DC+ V+P+ LLFFGG I+ +++   +TI VD+ I F SP +IA+LVK LR ELD LL +KI +P          KSRD  +L+AIIDLI T+
Sbjct:   57 LKGREIGMWYAKKQGQKNKEAERQERAVVHMDERREEQIVQLLNSVQAKNDKE------------SEAQISWFAPEDHGYGTEVSTKNTPCSENKLDIQEKKLINQEKKMFRIRNRSYIDRDSEYLLQENEPDGT----------LDQKLLEDLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGSGNSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDPYLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFRSDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDVIEKIRYVPEQKEHRSQFKRGFMQGHVNRQEKEEKEAIYKERWPDYVRELRRRYSASTVDVIEMMEDDKVDLNLIVALIRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLMDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKDTRSDHLTVVNAFEGWEEARRRGFRYEKDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPESNINSDNEKIIKAVICAGLYPKVAKIRLNLGKKRK------MVKVYTKTDGLVAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHP--VDWNDTKSRDCAVLSAIIDLIKTQ 990

The following BLAST results are available for this feature:

BLAST of TCONS_00014777-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014777-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DHX36	0.000e+0	47.93	ATP-dependent RNA helicase DHX36 OS=Homo sapiens G...	[more]

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TCONS_00014777-protein (polypeptide) - C. hemisphaerica