TCONS_00015265-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015265-protein
Unique Name	TCONS_00015265-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	844

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015265-protein ID=TCONS_00015265-protein|Name=TCONS_00015265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=844bp
MDKSEEKDLRNAVKNAKTAFYKDKGKQKQVFRREARRNKRVEKKAKHHQF
MLKKSGATVTEEKPEKKVKKRKKRKRKAQTKVAEGEGDEEGSLSYERYAY
EAANKQDENLIASLGKKLGLNKTKNQLKKMDEDGLDYLLEVCEPFGAGGA
GGEGDDAGANDSDEEYLRMKKAKKLKSSKNEKSSKPTKQVTKEGNDKTTE
AKRKEKLLFGEEEANDGEFDEDDLGDLEDEFAVLEGLHDDDDENEDDENM
SGGEFSEEEFEQGEDFEEGEDSEEGENLEKEQDGESDGEDNSSKQSTKEK
KAVEKHVTTAVSGGKYIPPALRKLQSKGEDEEKVKIERLKKQLKGLLNRV
SESTLPGITSEIALLYEKNSRYTMNELMFQAICDSCVAEALTPHRLMIQL
MVIVASLHKTSQCEIGSYFLQMLVEKFNTLHKVDEMEYNLDKKCANVLYL
ILTLYNLKVVESLLIYDIVRRLMSRFNEQDIELILMILKTCGPDMRKDDP
FALKEIILAIQAKSMASEAEDQSRVKFMLETINALKNNNMRKVPQYDPTL
IEDGRKIYKAITRGRETMNSGSQLKVSLEDLLNARDKGKWWVVGSAWAGR
GPNKTPEEKVVDEGGIQVPDASAKLLEKAKKQRMNTELRKNIFCILMTSE
DYLDAFEKLQKLSLKEKQAREIIHVVLDCCLQEKTYNPFYAHLADQFCGH
SHSNKITLQYSLWDRFKTLSTLSKHTCNNMAHLMSHLIASNSLTLGVLKV
VSFGMLDKQSIRFFTSFFKILLLQYPESSIKSAFMKIASNTKLASLREGI
KIFLRSFIAPRKDEDTNIAMKDRKMNELIDLVESALDGREYIPL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008539	XLOC_008539	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015265	TCONS_00015265	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003890	MIF4G-like_typ-3
IPR003891	Initiation_fac_eIF4g_MI
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003723	RNA binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 329..349
None	No IPR available	GENE3D	1.25.40.180		coord: 595..839 e-value: 2.0E-13 score: 49.5 coord: 299..573 e-value: 3.4E-38 score: 130.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93
IPR003890	MIF4G-like, type 3	SMART	SM00543	if4_15	coord: 340..539 e-value: 5.3E-21 score: 85.8
IPR003890	MIF4G-like, type 3	PFAM	PF02854	MIF4G	coord: 341..539 e-value: 3.9E-19 score: 69.1
IPR003891	Initiation factor eIF-4 gamma, MA3	SMART	SM00544	ma3_7	coord: 638..744 e-value: 2.0E-20 score: 83.8
IPR003891	Initiation factor eIF-4 gamma, MA3	PFAM	PF02847	MA3	coord: 638..743 e-value: 7.2E-23 score: 80.6
IPR003891	Initiation factor eIF-4 gamma, MA3	PROSITE	PS51366	MI	coord: 637..753 score: 21.464
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 330..541

Blast

[Close]

BLAST of TCONS_00015265-protein vs. Swiss-Prot (Human)
Match: NOM1 (Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1)

HSP 1 Score: 469.544 bits (1207), Expect = 7.890e-153
Identity = 238/542 (43.91%), Postives = 353/542 (65.13%), Query Frame = 0

Query:  312 SGGKYIPPALRKLQSKGEDEEKVKIERLKKQLKGLLNRVSESTLPGITSEIALLYEKNSRYTMNELMFQAICDSCVAEALTPHRLMIQLMVIVASLHKTSQCEIGSYFLQMLVEKFNTLHKVDEMEYNLDKKCANVLYLILTLYNLKVVESLLIYDIVRRLMSRFNEQDIELILMILKTCGPDMRKDDPFALKEIILAIQAKS--MASEAEDQSRVKFMLETINALKNNNMRKVPQYDPTLIEDGRKIYKAITRGRETMNSGS----QLKVSLEDLLNARDKGKWWVVGSAWAGRGPNKTPEEKVVDEGGIQ---VPDASAKLLEKAKKQRMNTELRKNIFCILMTSEDYLDAFEKLQKLSLKEKQAREIIHVVLDCCLQEKTYNPFYAHLADQFCGHSHSNKITLQYSLWDRFKTLSTLSKHTCNNMAHLMSHLIASNSLTLGVLKVVSFGMLDKQSIRFFTSFFKILLLQYPESSIKSAFMKIASNTKLASLREGIKIFLRSFI-----APRKDEDTNIAMKDRKMNELIDLVESALDGR 839
            SG KYIPP +R+ +   + ++K ++ERLKK +KGLLNR+SE  +  I+ ++  LY  +SR  MN+ +  A+  +CV  +  P RLM++ +++V+ LH T   E+G++FL+ +V KF+ ++K      +  K+C N+  +I  LYN  VV+SLLI+DI+++L+  F E+DIELIL++LK  G  +RKDD  +LKE+I   Q K+    SE +DQ+R++FMLET+ ALKNN+MRK+P YDP  +E  RK+ +A+ R     N+GS    QL+VS + +L+A   G+WW+VGSAW+G      P         +Q   V   S+K+LE A+KQRMNT++R+NIFC +MTSED+LDAFEKL KL LK++Q REIIHV++DCCLQEKTYNPFYA LA +FC +    ++T Q+S+WD+F+ L  L     +N+ HL++HL+ + SL+L +LKVV F  LDK  +RF      ILL++     +   F +++ N KL  LREG+K+F+  F+     A R  ++ N+      + E  DL    L G+
Sbjct:  334 SGEKYIPPHVRQAEETVDFKKKEELERLKKHVKGLLNRLSEPNMASISGQLEELYMAHSRKDMNDTLTSALMGACVTASAMPSRLMMEHVLLVSILHHTVGIEVGAHFLEAVVRKFDAIYKYG----SEGKECDNLFTVIAHLYNFHVVQSLLIFDILKKLIGTFTEKDIELILLMLKNVGFSLRKDDALSLKELITEAQTKASGAGSEFQDQTRIRFMLETMLALKNNDMRKIPGYDPEPVEKLRKLQRALVR-----NAGSGSETQLRVSWDSVLSAEQTGRWWIVGSAWSG-----APMIDNSHHTHLQKQLVGTVSSKILELARKQRMNTDIRRNIFCTIMTSEDFLDAFEKLLKLGLKDQQEREIIHVLMDCCLQEKTYNPFYAFLASKFCEYERRFQMTFQFSIWDKFRDLENLPATNFSNLVHLVAHLLKTKSLSLSILKVVEFSELDKPRVRFLRKVLSILLMETEVEDLSLIFTRVSDNPKLGVLREGLKLFISHFLLKNAQAHRSADEANV------LREKADLATKCLQGK 855

The following BLAST results are available for this feature:

BLAST of TCONS_00015265-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NOM1	7.890e-153	43.91	Nucleolar MIF4G domain-containing protein 1 OS=Hom...	[more]

You are here

TCONS_00015265-protein (polypeptide) - C. hemisphaerica