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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00015509-protein ID=TCONS_00015509-protein|Name=tudor domain-containing protein 1|organism=Clytia hemisphaerica|type=polypeptide|length=1495bp
MQRSPTCENCQRNFELRDYQPIGPRIPLLLKCGHTFCEGCLTKTARLHQE
IQCFKCGVKQTLEPRGEKGVQNLLPNIYMLGVLLFNRRAASCCNVDGAQG
CLSVFGGIKSINQRSIPDQEDTPVAEANVEPVKDICEECSKKQATCLCKN
CENTKFCDGCFVQVHRASKTLNKHSPFPIDYTSTESMTCTTHNDRTLEFY
DKDTKKAICALCIISETYRTHNIVPITEIENSEEESSTLDEAADKAKETL
KWLEISKKSLSESLPDEVANSYHLVSSVQAEFLQLHTLLLKRQLEIMEEA
SKDMSEIGSVHQEVQNLTIKIKEMKKTMKDYEMVKDDKKFKQLKGQELVD
KLNGLADQPCIYKHETLDESVNFQIQKDVSNTLKSVGSIEKKQAQFRLLK
VDELTDEEKEPILDKYSSDEKELNAVQENEIYQKKLEKKKVTPLMMIPQT
GHYELVYLTHTRDPLNFMVQRCADKDRLQVMMTALNKYCRHSNDATDRVY
NIDEGDIVCARYTQDHNWYRAQCVSAFCPKNPGVVPNYNNSLPVEVLYID
YGNSEWIPLNNLRKMKESLIEIPAMAVNCSLMDIVPPFKAVVWPERSIKA
FNSLTGDRPMLMNIRDRVPGKLLVDLRRPDDEEPTNDDDRPVSVRDALVF
LEVACIFSPSSFPNADIHKSAKDFPLHIPFNIEQYVDVTATHIVDYKHLY
LQRLDSPVLEEQTSLSKLYKGRNKRAWKIDWPYRNLVCAARFSGDQTWYR
AKVRNVNHDETVVVEYIDFGNEETLPFTDIKKIPDMYLKLPRQCVKVSLY
GIENVVEDEEAKKIRKFLDTKVLNQALVCLVKDINAEEEPEICLYDTSTS
QDININELLNNLDVLLPQESQTDETVNTANEPPSEPENLPQDDTDKVSVK
SDASSKASCPSQSSNLSSSQSASTITPFQVAPFLDKETLLMERHEASSFP
TFQQGANKDSTSSAPTSLQETTRNDHNVTPQPSPAFPQYMRAVFPKEEKF
KATGVYVDDDANLHLHVMIDDDNILERIMQKLNKNPAKQYKKHPKDTSHL
QINQAALGRFSQDGFWYRVRIMEIMTPQIVKIHFIDFGNTENAHISQLFE
KPKFLEVPAQCLSTKLANVSPSGNKWKRDAIQLLKEKIEEKQLDVRVEGD
RTFIIGDGEDLSLMLVNKGFASVAQHNPPAVDVTSEPSKDKSEPPSENRI
VEELFSTLSHSTDDAVSEPDHEAPSPAFPHPDDQAPTEEISNDLNTLTLS
ESPVETRLTYTEQTLPDVGVRFDVNVTQVDRPDLVYIQRASVTEGETSLS
DDSIDHTAFSAYEDLTELWELSENINSDGFFGEDAKVPSNQVKKGMACIG
RYSSDGQLYRALVLRVDHEEGVADLEYVDYGTKETVPIESIKPISHALLS
LPVQSSKVCVYGLKPRKDAEGKKLHDSDWTVETMKEFYNMVANKRLIAEI
IDQTISPPTIHLYDRCLREDSTTGQTDDVLIGQLMQNNNLAEYEI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 314..334 |
| None | No IPR available | COILS | Coil | Coil | coord: 229..249 |
| None | No IPR available | GENE3D | 2.40.50.90 | | coord: 1091..1214
e-value: 2.4E-14
score: 53.1
coord: 772..864
e-value: 1.5E-19
score: 69.8
coord: 554..657
e-value: 1.2E-24
score: 86.2
coord: 1383..1495
e-value: 2.0E-17
score: 62.9 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 1332..1382
e-value: 4.6E-16
score: 57.8 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 1024..1090
e-value: 1.6E-14
score: 53.2
coord: 476..553
e-value: 5.9E-17
score: 60.9 |
| None | No IPR available | GENE3D | 2.30.30.140 | | coord: 731..771
e-value: 3.5E-16
score: 58.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1177..1197 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 948..984 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 871..922 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1209..1238 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 735..782
e-value: 5.51503E-16
score: 73.7863 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 505..564
e-value: 3.99858E-13
score: 65.3119 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 1057..1100
e-value: 8.45685E-10
score: 55.6819 |
| None | No IPR available | CDD | cd04508 | TUDOR | coord: 1345..1393
e-value: 1.07279E-11
score: 61.0747 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 476..584 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 5..60 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 717..802 |
| None | No IPR available | SUPERFAMILY | 57845 | B-box zinc-binding domain | coord: 180..231 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 1318..1413 |
| None | No IPR available | SUPERFAMILY | 63748 | Tudor/PWWP/MBT | coord: 1024..1119 |
| IPR002999 | Tudor domain | SMART | SM00333 | TUDOR_7 | coord: 730..788
e-value: 3.5E-15
score: 66.4
coord: 500..570
e-value: 3.4E-9
score: 46.5
coord: 1340..1399
e-value: 4.0E-10
score: 49.6
coord: 1048..1106
e-value: 1.8E-6
score: 37.5 |
| IPR002999 | Tudor domain | PFAM | PF00567 | TUDOR | coord: 451..581
e-value: 3.4E-22
score: 78.7
coord: 684..801
e-value: 1.6E-19
score: 70.1
coord: 995..1118
e-value: 1.3E-14
score: 54.1
coord: 1320..1412
e-value: 3.7E-15
score: 55.9 |
| IPR002999 | Tudor domain | PROSITE | PS50304 | TUDOR | coord: 501..572
score: 14.311 |
| IPR002999 | Tudor domain | PROSITE | PS50304 | TUDOR | coord: 1049..1108
score: 11.611 |
| IPR002999 | Tudor domain | PROSITE | PS50304 | TUDOR | coord: 731..790
score: 14.714 |
| IPR002999 | Tudor domain | PROSITE | PS50304 | TUDOR | coord: 1341..1401
score: 16.769 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 1..79
e-value: 2.0E-6
score: 27.0 |
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif | PFAM | PF13445 | zf-RING_UBOX | coord: 7..53
e-value: 3.9E-5
score: 23.5 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 32..41 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 7..56
score: 9.539 |
| IPR000315 | B-box-type zinc finger | PROSITE | PS50119 | ZF_BBOX | coord: 184..226
score: 9.343 |
Blast
BLAST of tudor domain-containing protein 1 vs. Swiss-Prot (Human)
Match: RNF17 (RING finger protein 17 OS=Homo sapiens GN=RNF17 PE=1 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 4.589e-28 Identity = 109/391 (27.88%), Postives = 182/391 (46.55%), Query Frame = 0
Query: 454 ELVYLTHTRDPLNFMVQRCADKDRLQVMMTALNKYCRHSN--DATDRVYNIDEGDIVCARYTQDHNWYRAQCVSAFC--------PKNPGVVPNYNNSLPVEVLYIDYGNSE--------------------WIPLNNL----RKMK---ESLI-EIPAMAVNCSLMDIVPPFKAVVWPERSIKAFNSLTGDRPMLMNIRDRVPGKLLVDLRRPDDEEPTN--DDDRPVSVRDALVFLEVACIFSPSSFPNADIHKSAKDFPLHIPFNIEQYVDVTATHIVDYKHLYLQRLDS-PVLEEQTSLSKLYKGRNKRAWKIDWPYRNLVCAARFSGDQTWYRAKVRNVNHDETVVVEYIDFGNEETLPFTDIKKIPDMYLKLPRQCVKVSLYGIE 803
ELV+++H DP +F +++ + +V+ +N++C S+ D +D ++ G + ++ W R P +P + + +L +++ +D+GNSE I LN+L RK + E L+ +I +A CSL DIVP W E + F + ++ + M + G L+VDL++P P N D PVS+RDALVF+E+A S S + + + + P +P + V VT HI YLQ ++ +L ++ + YK + +I P ++ C A+F D WYRAKV + + V V+Y+DFGN + D++KI D +L P + +K L IE
Sbjct: 417 ELVFVSHVIDPCHFYIRKYSQIKDAKVLEKKVNEFCNRSSHLDPSDI---LELGARIFVSSIKNGMWCRGTITELIPIEGRNTRKPCSPTRLFVHEVAL-IQIFMVDFGNSEVLIVTGVVDTHVRPEHSAKQHIALNDLCLVLRKSEPYTEGLLKDIQPLAQPCSLKDIVPQNSNEGWEEEAKVEFLKMVNNKAVSMKVFREEDGVLIVDLQKP----PPNKISSDMPVSLRDALVFMELAKFKSQSLRSHFEKNTTLHYHPPILPKEMTD-VSVTVCHINSPGDFYLQLIEGLDILFLLKTIEEFYKSEDGENLEILCPVQDQACVAKFE-DGIWYRAKVIGLPGHQEVEVKYVDFGNTAKITIKDVRKIKDEFLNAPEKAIKCKLAYIE 797
The following BLAST results are available for this feature:
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