TCONS_00015765-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00015765-protein
Unique Name	TCONS_00015765-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1357

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00015765-protein ID=TCONS_00015765-protein|Name=TCONS_00015765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1357bp
MASNKSLLIHDDYMRRKYEDLSDEETGKILDFGQLKFKKTSKVLDRSPVK
KTAQNLKNGKSLAKGKEKPALDIPPRAEKVPYKLNEDHDVSIPASINQYL
HQYQREGVSFLWNHYCQHKGCILADDMGLGKTIQVLALFAAVLESKPKNP
PIFLVVAPTSVLYNWQDEMDVWLNIRVGMFHRKNKQEIIDQAKNKEFDVI
LTTHETMRIYFDMVSQILWSAVIFDEVHRIKEETSQLTQTSKELPSLCRI
GLTGTPLQNNLKELWCLLDWANPGCLGPSKAFEERFEKPIMLGQRLDATK
RELAIARKKQQELALLHSDWMLRRTKENHLHELPRKDEKIVFCPVSPLQK
AIYEEILKLPKCKMLLLLDKKCRCGSGRNGRRCCLQRFNWRKIMFPFIQL
FLKLSNHTALLFPSSISHDRKTNKVNSELNMEVFEHLQKTFPRFKELSSG
GANLFANLSSFELCGKMAVLHKLMTSLLSKGDKILLFSHSTRLLNILETY
IVSRGILTRRIDGSTAPKQRHYIMKEFNNNHELSVCLLSTKAGALGMNFT
GANVVIIFDPCWNPTYEQQAQDRAYRIGQRRNVSVYRLISVGTIEENMYM
RQIYKQQLSNIAIEMSTESRYFTGVANNVEHHGELFGVSNMFRFSADHTS
GFAKEVFGKTKQIDNDVAIARYQSPVSRKKPSQRLKSNHRHQPLEDSDDD
YTQDATQCADDILTNDDDGDSENEEVEWSDQVEAELDQLLGSCDVSLAPT
AKHLVGASRHEEKLSNKAISDVFWKGKNSQDFANKEESQESQDVCLGSKE
EPQAIDNRDFKPLPATARMREKHMFERIGNTMFMIGSTPKSIMGEQFEEL
AKMNGVSVEKLADLILNQSEAESKKMLRDYYVNKEPNLRLVSSFDKIYGN
DENKFTTLVDGDYGTKHGLLRGNSSLKSKRPPARRKNHHSKTKDCSSLLD
IDNDLVKSSRKERKKVTSPMEKQFDQFSKIDILGSNKLKRKIDKSSKTCS
RPDIHNDPFTAFEKIRESFHKEETQLIDDWSSDEENESKRNEKSVSRRGK
TFKCTPNSYQKLSPALNNSPKVTRKSGATIKVENTLEDYKSQKTFGNFST
PKSAIPETLINGGSILDEILANDSPYKPKRVKSDSNQNTNHGQRSLEKLP
KSSEMSRIKQELSSSVTTPERIFTKRRDTPDNKSRTQTPLIKLEPNTSIL
DNLLGIKSPRKPNSNRIIPDSLDDENSPEESSLKSPRNTKKIGKLVPTCF
PESPIPRNRFGTTNLDKGSMGKSSPSKMLYDPTIFLEKGKSILDELLNLD
AKPRRRVGTSDSRTSCHRDEDVITSNCHGNRNVAKATTPKRTLNKLPNTT
SILDEFL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_008805	XLOC_008805	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00015765	TCONS_00015765	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd
IPR000330	SNF2_N
IPR002464	DNA/RNA_helicase_DEAH_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 495..578 e-value: 1.3E-20 score: 84.5
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 467..578 e-value: 3.3E-18 score: 66.0
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 469..623 score: 16.34
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 96..285 e-value: 5.6E-35 score: 132.2
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 112..274 score: 22.939
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 99..370 e-value: 4.2E-50 score: 170.3
None	No IPR available	GENE3D	3.40.50.300		coord: 459..616 e-value: 6.7E-31 score: 106.4
None	No IPR available	GENE3D	3.40.50.10810		coord: 76..323 e-value: 2.2E-52 score: 177.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1026..1076
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 671..702
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 919..945
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 781..803
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1125..1274
None	No IPR available	CDD	cd00046	DEXDc	coord: 119..256 e-value: 9.18008E-23 score: 95.8672
None	No IPR available	CDD	cd00079	HELICc	coord: 465..586 e-value: 9.83569E-26 score: 104.242
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 220..229
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 457..639 coord: 325..430
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 77..324

Blast

[Close]

BLAST of TCONS_00015765-protein vs. Swiss-Prot (Human)
Match: ER6L2 (DNA excision repair protein ERCC-6-like 2 OS=Homo sapiens GN=ERCC6L2 PE=1 SV=2)

HSP 1 Score: 530.406 bits (1365), Expect = 2.943e-163
Identity = 267/619 (43.13%), Postives = 380/619 (61.39%), Query Frame = 0

Query:   80 VPYKLNEDHDVSIPASINQYLHQYQREGVSFLWNHYCQHKGCILADDMGLGKTIQVLALFAAVLESK------PKNPP------------------IFLVVAPTSVLYNWQDEMDVWLNIRVGMFHRKNKQEIIDQAKNKEFDVILTTHETMRIYFDMVSQILWSAVIFDEVHRIKEETSQLTQTSKELPSLCRIGLTGTPLQNNLKELWCLLDWANPGCLGPSKAFEERFEKPIMLGQRLDATKRELAIARKKQQELALLHSDWMLRRTKENHLHELPRKDEKIVFCPVSPLQKAIYEEILKLPKCKMLLLLDKKCRCGSGRNGRRCCLQRFNW----RKIMFPFIQLFLKLSNHTALLFPSSISHDRKTNKVNSELNMEVFEHLQKTFPRFKELSSGGANLFANLSSFELCGKMAVLHKLMTSLLSKGDKILLFSHSTRLLNILETYIVSRGILTRRIDGSTAPKQRHYIMKEFNNNHELSVCLLSTKAGALGMNFTGANVVIIFDPCWNPTYEQQAQDRAYRIGQRRNVSVYRLISVGTIEENMYMRQIYKQQLSNIAIEMSTESRYFTGVANNVEHHGELFGVSNMFRFSADHTSGFAKEVFGKTKQIDNDVAIA 670
            V +KL+++ D SIP +IN+YL  YQREG  FL+ HY    GCIL DDMGLGKT+QV++  AAVL  K        N P                  +FL+VAP SVLYNW+DE+D W   RV + H   K   + + K ++ ++ LTT+ET+R+  D ++ + WSAVI DE HRIK   +++T+  K L    RIGLTGT LQNN+KELWC++DWA PG LG    F+++F  P+  GQR  ATKRELA  RK  Q LA   S W LRRTK     +LP+K++++V+C ++  QKA+Y+ +L+     ++L   + C C SG+  R CC +  +     + +   ++ +  K++NH ALL  +S S  ++T      L   + + +   FP F + S   A  F  LS  +  GKM VL +L+       DK+LLFS ST+LL++L+ Y ++ G+  RR+DGST  ++R  I+KEFN+  ++++CL+ST AG LG+NF GANVV++FDP WNP  + QA DRAYRIGQ R+V V RLIS+GT+EE MY+RQIYKQQL  + +      RYF  V  + EH GELFG+ N+F+F +   S   K++  +  Q++  +  A
Sbjct:  115 VAFKLSDNGD-SIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET------LIKRICDQVFSRFPDFVQKSKDAA--FETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRS-QGSCLTKDILEREGQVEAGIMTA 723

The following BLAST results are available for this feature:

BLAST of TCONS_00015765-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00015765-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ER6L2	2.943e-163	43.13	DNA excision repair protein ERCC-6-like 2 OS=Homo ...	[more]

You are here

TCONS_00015765-protein (polypeptide) - C. hemisphaerica