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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015765 ID=TCONS_00015765|Name=TCONS_00015765|organism=Clytia hemisphaerica|type=transcript|length=4423bpRun BLAST on NCBI protein sequence of TCONS_00015765-protein >TCONS_00015765-protein ID=TCONS_00015765-protein|Name=TCONS_00015765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1357bp MASNKSLLIHDDYMRRKYEDLSDEETGKILDFGQLKFKKTSKVLDRSPVKRun BLAST on NCBI transcript from alignment at sc0000216:95200..118854- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015765 ID=TCONS_00015765|Name=TCONS_00015765|organism=Clytia hemisphaerica|type=transcript|length=23655bp|location=Sequence derived from alignment at sc0000216:95200..118854- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000216:95200..118854- >TCONS_00015765 ID=TCONS_00015765|Name=TCONS_00015765|organism=Clytia hemisphaerica|type=CDS|length=81480bp|location=Sequence derived from alignment at sc0000216:95200..118854- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015765 vs. Swiss-Prot (Human)
Match: ER6L2 (DNA excision repair protein ERCC-6-like 2 OS=Homo sapiens GN=ERCC6L2 PE=1 SV=2) HSP 1 Score: 496.893 bits (1278), Expect = 7.386e-149 Identity = 267/619 (43.13%), Postives = 380/619 (61.39%), Query Frame = 3
Query: 300 VPYKLNEDHDVSIPASINQYLHQYQREGVSFLWNHYCQHKGCILADDMGLGKTIQVLALFAAVLESK------PKNPP------------------IFLVVAPTSVLYNWQDEMDVWLNIRVGMFHRKNKQEIIDQAKNKEFDVILTTHETMRIYFDMVSQILWSAVIFDEVHRIKEETSQLTQTSKELPSLCRIGLTGTPLQNNLKELWCLLDWANPGCLGPSKAFEERFEKPIMLGQRLDATKRELAIARKKQQELALLHSDWMLRRTKENHLHELPRKDEKIVFCPVSPLQKAIYEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQRFN----WRKIMFPFIQLFLKLSNHTALLFPSSISHDRKTNKVNSELNMEVFEHLQKTFPRFKELSSGGANLFANLSSFELCGKMAVLHKLMTSLLSKGDKILLFSHSTRLLNILETYIVSRGILTRRIDGSTAPKQRHYIMKEFNNNHELSVCLLSTKAGALGMNFTGANVVIIFDPCWNPTYEQQAQDRAYRIGQRRNVSVYRLISVGTIEENMYMRQIYKQQLSNIAIEMSTESRYFTGVANNVEHHGELFGVSNMFRFSADHTSGFAKEVFGKTKQIDNDVAIA 2072
V +KL+++ D SIP +IN+YL YQREG FL+ HY GCIL DDMGLGKT+QV++ AAVL K N P +FL+VAP SVLYNW+DE+D W RV + H K + + K ++ ++ LTT+ET+R+ D ++ + WSAVI DE HRIK +++T+ K L RIGLTGT LQNN+KELWC++DWA PG LG F+++F P+ GQR ATKRELA RK Q LA S W LRRTK +LP+K++++V+C ++ QKA+Y+ +L+ ++L + C C SG+ R CC + + + + ++ + K++NH ALL +S S ++T L + + + FP F + S A F LS + GKM VL +L+ DK+LLFS ST+LL++L+ Y ++ G+ RR+DGST ++R I+KEFN+ ++++CL+ST AG LG+NF GANVV++FDP WNP + QA DRAYRIGQ R+V V RLIS+GT+EE MY+RQIYKQQL + + RYF V + EH GELFG+ N+F+F + S K++ + Q++ + A
Sbjct: 115 VAFKLSDNGD-SIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQET------LIKRICDQVFSRFPDFVQKSKDAA--FETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYFEAVQGSKEHQGELFGIHNLFKFRS-QGSCLTKDILEREGQVEAGIMTA 723 The following BLAST results are available for this feature:
BLAST of TCONS_00015765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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