Ahr-b (polypeptide) - C. hemisphaerica

Overview
NameAhr-b
Unique NameTCONS_00016274-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length762

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016274-protein ID=TCONS_00016274-protein|Name=Ahr-b|organism=Clytia hemisphaerica|type=polypeptide|length=762bp
MSNMTKLHESLVEECMNLSIENGSSIVKDFNVAKGKKKKTKTSNKKEKKP
KEHKEPKINQKYNQSVNPSKRHRDRLNSELDNLAKLLPFPEDVIARLDKL
SILRLSVSFLRNKNFFKGAVNDKKDSTANGKTEVTASKNDNRFNHFLNKA
LDGFILVVTVDGEIFFASESVKDYLGYSQSSVLHQSLETFVHNDDKDELL
LYIKSISSKKIVELDENNQDLMDDDMFKKEHEFIVRLKSVLNNGTSDMYK
PFKITGRIRKLNMQQDIVNLKYALFATCTPARTSVSVLEIRMKSTLFCSK
NRIDLSFLDLDARGKEYFGYSKKDIFGRSSYVMVHRLDVQHVRCKHTEIV
TCGKTSIGTFRLKNKNNEWNWLSGYGRVLYKNGKPDYMVTTNRVLSEEEG
RAMMKLRDEADRKALEALGLVEPEEESKALELGFPKRHPGPMSASLSTSS
ADEEGIPMPLGNFLEGLAQNPPDFEKVGAAGMPFDTKMITDDRVPLSDNT
SNNAPDELENSPRSPIGGNSVLSIKAEAHSPLSDYNLPIELQQALSVASG
ESAHSPLPSNIPQQQQTPSDLFQTNTSSTHQFSSIDLPLDYDTMMSTQPP
PQPRFSFLPPVSFNQTNAQTPMLQNRLPENLQQQSPSLFSPNIAQHGGGG
GHNMVRAQTYEQMVGPNVALAPPSDYMFHHHHSINTQHQPFMPHLIDNNY
MAQHNGTIDWARQNEFSNTSSMFHFLNNSNTSPSSSDAHSVHSGGAQTGV
QFNNYPPTTPIP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009089XLOC_009089Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016274TCONS_00016274Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR000014PAS
IPR013767PAS_fold
IPR013655PAS_fold_3
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0005515 protein binding
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 67..122
e-value: 1.7E-4
score: 31.0
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 32..112
e-value: 8.7E-6
score: 25.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 70..111
e-value: 1.4E-4
score: 21.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 60..113
score: 12.049
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 70..112
e-value: 3.35449E-7
score: 47.2087
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 70..112
IPR000014PAS domainSMARTSM00091pas_2coord: 142..208
e-value: 5.0E-7
score: 39.3
coord: 282..351
e-value: 47.0
score: 6.3
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 140..209
e-value: 4.7E-7
score: 28.0
IPR000014PAS domainPROSITEPS50112PAScoord: 139..210
score: 14.224
IPR000014PAS domainCDDcd00130PAScoord: 307..380
e-value: 1.08346E-4
score: 40.3091
IPR000014PAS domainCDDcd00130PAScoord: 151..205
e-value: 8.59544E-8
score: 49.9391
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 304..397
IPR000014PAS domainSUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 151..199
IPR013767PAS foldPFAMPF00989PAScoord: 147..215
e-value: 6.6E-7
score: 29.2
IPR013655PAS fold-3PFAMPF08447PAS_3coord: 309..392
e-value: 9.8E-12
score: 44.9
NoneNo IPR availableGENE3D3.30.450.20coord: 287..426
e-value: 1.6E-13
score: 50.0
NoneNo IPR availableGENE3D3.30.450.20coord: 128..278
e-value: 3.3E-23
score: 81.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 727..762
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..516
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 550..577

Blast
[Close]
BLAST of Ahr-b vs. Swiss-Prot (Human)
Match: AHR (Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 8.049e-72
Identity = 142/393 (36.13%), Postives = 227/393 (57.76%), Query Frame = 0 
Query:   43 SNKKEKKPKEHKEPKINQKYNQSVNPSKRHRDRLNSELDNLAKLLPFPEDVIARLDKLSILRLSVSFLRNKNFFKGAVNDKKDSTANGKTEVTASKNDNRFN----HFLNKALDGFILVVTVDGEIFFASESVKDYLGYSQSSVLHQSLETFVHNDDKDELLLYI-------KSISSKKIVE---------LDENNQDLMDDDMFKKEHEFIVRLKSVLNNGTSDMYKPFKITGRIRKLNMQQ------DIVNLKYALFATCTPARTSVSVLEIRMKSTLFCSKNRIDLSFLDLDARGKEYFGYSKKDIFGR-SSYVMVHRLDVQHVRCKHTEIVTCGKTSIGTFRLKNKNNEWNWLSGYGRVLYKNGKPDYMVTTNRVLSEEEGRAMMKLRD 408
            +++K +KP +     I  +  +S NPSKRHRDRLN+ELD LA LLPFP+DVI +LDKLS+LRLSVS+LR K+FF  A+         G+    A+      N     FL +AL+GF+LVVT D  +F+AS +++DYLG+ QS V+HQS+   +H +D+ E    +       +   S + +E         +  N   +  ++    E  FI RL+ +L+N +  +   F+  G+++ L+ Q+       I+  + ALFA  TP +   S+LEIR K+ +F +K+++D + +  DA+G+   GY++ ++  R S Y  +H  D+ +    H  ++  G++ +  FRL  KNN W W+    R+LYKNG+PDY++ T R L++EEG   ++ R+
Sbjct:   11 ASRKRRKPVQKTVKPIPAEGIKS-NPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAKSFFDVALKSSPTERNGGQDNCRAANFREGLNLQEGEFLLQALNGFVLVVTTDALVFYASSTIQDYLGFQQSDVIHQSVYELIHTEDRAEFQRQLHWALNPSQCTESGQGIEEATGLPQTVVCYNPDQIPPENSPLMERCFICRLRCLLDNSSGFLAMNFQ--GKLKYLHGQKKKGKDGSILPPQLALFAIATPLQPP-SILEIRTKNFIFRTKHKLDFTPIGCDAKGRIVLGYTEAELCTRGSGYQFIHAADMLYCAESHIRMIKTGESGMIVFRLLTKNNRWTWVQSNARLLYKNGRPDYIIVTQRPLTDEEGTEHLRKRN 399
The following BLAST results are available for this feature:
BLAST of Ahr-b vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AHR8.049e-7236.13Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR P... [more]
back to top