TCONS_00016398-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016398-protein
Unique NameTCONS_00016398-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016398-protein ID=TCONS_00016398-protein|Name=TCONS_00016398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
KPLLNIANGTLFYGKVDQGEEGFILAYVFRRKISKLSVEMAKTQTNLKTP
SKDIKICLIGDSNVGKTCLALRFVRGKFESEVKSTIAASFFTKVLTVDGH
GVNLHIWDTAGQERFHSMAPIYYRGAAAAIIVYDITSKTSFLGAKRWMKE
LQKHGPENIVLVIAANKNDLEDKREVLEQTGRDFANEAGAIFRECSALNA
FNVTSIFEVIGQKLLSSDEHRVLINDSSLKVTDKSQTNNGDSKKRQCPC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009160XLOC_009160Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016398TCONS_00016398Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 95..117
score: 49.57
coord: 77..93
score: 29.34
coord: 157..170
score: 36.87
coord: 192..214
score: 31.73
coord: 54..75
score: 46.29
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 54..217
e-value: 2.7E-72
score: 256.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 51..217
e-value: 2.5E-22
score: 90.2
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 36..218
e-value: 0.0057
score: -1.3
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 59..245
e-value: 9.6E-5
score: 18.5
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 56..216
e-value: 8.3E-13
score: 44.0
NoneNo IPR availableGENE3D3.40.50.300coord: 118..214
e-value: 2.2E-32
score: 110.6
NoneNo IPR availableGENE3D3.30.70.1390coord: 52..117
e-value: 8.5E-27
score: 92.5
NoneNo IPR availablePROSITEPS51419RABcoord: 49..249
score: 30.652
NoneNo IPR availableCDDcd01860Rab5_relatedcoord: 55..215
e-value: 1.00208E-86
score: 256.325
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 52..210
e-value: 3.5E-32
score: 109.4
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 55..214
e-value: 2.2E-54
score: 183.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 50..215

Blast
[Close]
BLAST of TCONS_00016398-protein vs. Swiss-Prot (Human)
Match: RAB31 (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.818e-58
Identity = 84/169 (49.70%), Postives = 116/169 (68.64%), Query Frame = 0 
Query:   52 KDIKICLIGDSNVGKTCLALRFVRGKFESEVKSTIAASFFTKVLTVDGHGVNLHIWDTAGQERFHSMAPIYYRGAAAAIIVYDITSKTSFLGAKRWMKELQKHGPENIVLVIAANKNDLEDKREVLEQTGRDFANEAGAIFRECSALNAFNVTSIFEVIGQKLLSSDEH 220
            +++K+CL+GD+ VGK+ +  RFV+  F+  +  TI ASF TK +          IWDTAGQERFHS+AP+YYRG+AAA+IVYDIT + SF   K+W+KEL++HGPENIV+ IA NK DL D REV  +  +++A   GAI  E SA NA N+  +F+ I +++   D H
Sbjct:    4 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 172
The following BLAST results are available for this feature:
BLAST of TCONS_00016398-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB312.818e-5849.70Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
back to top