TCONS_00016398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016398
Unique NameTCONS_00016398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016398 ID=TCONS_00016398|Name=TCONS_00016398|organism=Clytia hemisphaerica|type=transcript|length=967bp
CCAAACCTCTTTTAAACATTGCTAACGGCACTTTATTTTATGGTAAAGTT
GACCAAGGGGAAGAAGGATTCATTCTTGCTTATGTGTTtagaagaaaaat
atcaaaattgtcAGTTGAAATGGCGAAAACTCAAACAAACTTGAAAACGC
CATCCAAAGATATCAAAATCTGTTTGATTGGGGATTCAAATGTTGGCAAA
ACATGTTTGGCACTCAGATTTGTCCGTGGTAAATTCGAGAGCGAGGTTAA
GAGCACCATAGCTGCATCGTTTTTCACGAAAGTTCTTACCGTAGATGGGC
ACGGGGTCAATCTCCATATATGGGACACAGCTGGCCAAGAAAGGTTTCAT
TCAATGGCACCAATCTATTATCGAGGAGCTGCGGCTGCAATTATTGTTTA
CGATATTACATCAAAAACATCGTTCTTGGGTGCTAAAAGATGGATGAAGG
AACTCCAAAAACACGGACCGGAAAATATTGTTTTGGTAATTGCTGCAAAC
AAGAATGATTTGGAGGACAAGAGAGAGGTGTTAGAACAAACTGGAAGAGA
CTTTGCAAATGAAGCTGGAGCTATTTTTAGAGAATGTTCAGCCTTGAATG
CTTTTAATGTAACTTCAATATTTGAGGTTATTGGTCAAAAGCTTTTATCA
AGTGATGAACATCGTGTTTTGATTAATGACAGTTCTTTGAAGGTGACTGA
TAAAAGTCAAACGAACAATGGTGATTCAAAGAAAAGACAATGTCCCTGTT
AACTGTGcgtgttgttttttttgtcaaatattaCAGAGGAGCCTTTATAA
TAATTCAGAACTTTATAGATATACTTCttataagaaactcttttcgctag
aggatgagcagaagcctaaacACACACaggaaacacaaatttgttcgaat
tatagaaatttcGACATACAAAttaaggtttataaggtattgttaactga
agggaccagaaaacCTG
Run BLAST on NCBI

protein sequence of TCONS_00016398-protein

>TCONS_00016398-protein ID=TCONS_00016398-protein|Name=TCONS_00016398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
KPLLNIANGTLFYGKVDQGEEGFILAYVFRRKISKLSVEMAKTQTNLKTP
SKDIKICLIGDSNVGKTCLALRFVRGKFESEVKSTIAASFFTKVLTVDGH
GVNLHIWDTAGQERFHSMAPIYYRGAAAAIIVYDITSKTSFLGAKRWMKE
LQKHGPENIVLVIAANKNDLEDKREVLEQTGRDFANEAGAIFRECSALNA
FNVTSIFEVIGQKLLSSDEHRVLINDSSLKVTDKSQTNNGDSKKRQCPC
Run BLAST on NCBI

transcript from alignment at sc0000237:57710..59330+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016398 ID=TCONS_00016398|Name=TCONS_00016398|organism=Clytia hemisphaerica|type=transcript|length=1621bp|location=Sequence derived from alignment at sc0000237:57710..59330+ (Clytia hemisphaerica)
CCAAACCTCTTTTAAACATTGCTAACGGCACTTTATTTTATGGTAAAGTT
GACCAAGGGGAAGAAGGATTCATTCTTGCTTATGTGTTtagaagaaaaat
atcaaaattgtcAGTTGAAATGGCGAAAACTCAAACAAACTTGAAAACGC
CATCCAAAGATATCAAAATCTGTTTGATTGGGGATTCAAATGTTGGCAAA
ACATGTTTGGCACTCAGATTTGTCCGTGGTAAATTCGAGAGCGAGGTTAA
GAGCACCATAGCTGCATCGTTTTTCACGAAAGTTCTTACCGTAGATGGGC
ACGGGGTCAATCTCCATATATGGGACACAGCTGGCCAAGAAAGGTGAGCC
ATTTTTTAATTGAACAAGTTCGTAAAtgctaaagaaaaaagaacagcTCC
GAGCCTGGAATTTTACTGAAATTTTTACCctttaggaaaataaattttgg
caaatCTATCAAATTCCAACGCCAGCAATTAATTAAATTTCCTTACCCCG
TTTACTAGGGACCTTGGAGTAAAGGGTCAAATTAGTTTGAACCGAATATA
TCCATTAAaccttataagaaaaatgtgtTTGATTTGGCTACACATCACAA
ggctttttatgtttcacttATATTAAACCTTACCTTAAATACTTCAATTT
TCCCCTTGTAAGCAACACAATAAGAATAATTTGAGACTGATATCAAATCT
ACCATTCATTCATTGGTTTACACTTGTTTTCGTCACGTTTAGTTTATAAT
AGTTTCcaagaaaattttcgagaatTGGAGGCCTATGGAAGCCCTTACTA
CAAGAAAAATTAGAttagaattttggaattttataTTTCAATGTATCTAT
CTCAGCATAGTCACTAGAATTATACATGGTCAGGAAGTCGGCTTGGTTCG
GAGGCAGAATTGATTAcgtgaccaaaataaaaaatcggcCAACCTCTGAG
CTGGGACTTCCAGACCATGTATAATATTCAATGTATCTATATCTCAGGTT
TCATTCAATGGCACCAATCTATTATCGAGGAGCTGCGGCTGCAATTATTG
TTTACGATATTACATCAAAAACATCGTTCTTGGGTGCTAAAAGATGGATG
AAGGAACTCCAAAAACACGGACCGGAAAATATTGTTTTGGTAATTGCTGC
AAACAAGAATGATTTGGAGGACAAGAGAGAGGTGTTAGAACAAACTGGAA
GAGACTTTGCAAATGAAGCTGGAGCTATTTTTAGAGAATGTTCAGCCTTG
AATGCTTTTAATGTAACTTCAATATTTGAGGTTATTGGTCAAAAGCTTTT
ATCAAGTGATGAACATCGTGTTTTGATTAATGACAGTTCTTTGAAGGTGA
CTGATAAAAGTCAAACGAACAATGGTGATTCAAAGAAAAGACAATGTCCC
TGTTAACTGTGcgtgttgttttttttgtcaaatattaCAGAGGAGCCTTT
ATAATAATTCAGAACTTTATAGATATACTTCttataagaaactcttttcg
ctagaggatgagcagaagcctaaacACACACaggaaacacaaatttgttc
gaattatagaaatttcGACATACAAAttaaggtttataaggtattgttaa
ctgaagggaccagaaaacCTG

Coding sequence (CDS) from alignment at sc0000237:57710..59330+

>TCONS_00016398 ID=TCONS_00016398|Name=TCONS_00016398|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000237:57710..59330+ (Clytia hemisphaerica)
AAACCTCTTTTAAACATTGCTAACGGCACTTTATTTTATGGTAAAGTTGA
CCAAGGGGAAGAAGGATTCATTCTTGCTTATGTGTTtagaagaaaaatat
caaaattgtcAGTTGAAATGGCGAAAACTCAAACAAACTTGAAAACGCCA
TCCAAAGATATCAAAATCTGTTTGATTGGGGATTCAAATGTTGGCAAAAC
ATGTTTGGCACTCAGATTTGTCCGTGGTAAATTCGAGAGCGAGGTTAAGA
GCACCATAGCTGCATCGTTTTTCACGAAAGTTCTTACCGTAGATGGGCAC
GGGGTCAATCTCCATATATGGGACACAGCTGGCCAAGAAAGGTTTCATTC
AATGGCACCAATCTATTATCGAGGAGCTGCGGCTGCAATTATTGTTTACG
ATATTACATCAAAAACATCGTTCTTGGGTGCTAAAAGATGGATGAAGGAA
CTCCAAAAACACGGACCGGAAAATATTGTTTTGGTAATTGCTGCAAACAA
GAATGATTTGGAGGACAAGAGAGAGGTGTTAGAACAAACTGGAAGAGACT
TTGCAAATGAAGCTGGAGCTATTTTTAGAGAATGTTCAGCCTTGAATGCT
TTTAATGTAACTTCAATATTTGAGGTTATTGGTCAAAAGCTTTTATCAAG
TGATGAACATCGTGTTTTGATTAATGACAGTTCTTTGAAGGTGACTGATA
AAAGTCAAACGAACAATGGTGATTCAAAGAAAAGACAATGTCCCTGTTAA
AAACCTCTTTTAAACATTGCTAACGGCACTTTATTTTATGGTAAAGTTGA
CCAAGGGGAAGAAGGATTCATTCTTGCTTATGTGTTtagaagaaaaatat
caaaattgtcAGTTGAAATGGCGAAAACTCAAACAAACTTGAAAACGCCA
TCCAAAGATATCAAAATCTGTTTGATTGGGGATTCAAATGTTGGCAAAAC
ATGTTTGGCACTCAGATTTGTCCGTGGTAAATTCGAGAGCGAGGTTAAGA
GCACCATAGCTGCATCGTTTTTCACGAAAGTTCTTACCGTAGATGGGCAC
GGGGTCAATCTCCATATATGGGACACAGCTGGCCAAGAAAGGTTTCATTC
AATGGCACCAATCTATTATCGAGGAGCTGCGGCTGCAATTATTGTTTACG
ATATTACATCAAAAACATCGTTCTTGGGTGCTAAAAGATGGATGAAGGAA
CTCCAAAAACACGGACCGGAAAATATTGTTTTGGTAATTGCTGCAAACAA
GAATGATTTGGAGGACAAGAGAGAGGTGTTAGAACAAACTGGAAGAGACT
TTGCAAATGAAGCTGGAGCTATTTTTAGAGAATGTTCAGCCTTGAATGCT
TTTAATGTAACTTCAATATTTGAGGTTATTGGTCAAAAGCTTTTATCAAG
TGATGAACATCGTGTTTTGATTAATGACAGTTCTTTGAAGGTGACTGATA
AAAGTCAAACGAACAATGGTGATTCAAAGAAAAGACAATGTCCCTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009160XLOC_009160Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016398-proteinTCONS_00016398-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016398-exon-sc0000237-1491911889:57710..58052TCONS_00016398-exon-sc0000237-1491911889:57710..58052Clytia hemisphaericaexon
TCONS_00016398-exon-sc0000237-1510915933:57710..58052TCONS_00016398-exon-sc0000237-1510915933:57710..58052Clytia hemisphaericaexon
TCONS_00016398-exon-sc0000237-1575043694:57710..58052TCONS_00016398-exon-sc0000237-1575043694:57710..58052Clytia hemisphaericaexon
TCONS_00016398-exon-sc0000237-1491911889:58707..59330TCONS_00016398-exon-sc0000237-1491911889:58707..59330Clytia hemisphaericaexon
TCONS_00016398-exon-sc0000237-1510915933:58707..59330TCONS_00016398-exon-sc0000237-1510915933:58707..59330Clytia hemisphaericaexon
TCONS_00016398-exon-sc0000237-1575043694:58707..59330TCONS_00016398-exon-sc0000237-1575043694:58707..59330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:57710..59330 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105615	0.228208	0.0589537	0.166817	0.126465	0.149631	0.789202	1.07346	0.749899	2.25065	0.711287	1.06032	3.89584	4.29948	14.9093	8.18833	3.28002	2.51212	2.58855	3.74991	0.0912287	0.0665679	0.810294	0.536682	2.76876	3.45334	1.68218	1.72402	2.23578	0.899777
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00016398 vs. Swiss-Prot (Human)
Match: RAB31 (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.051e-56
Identity = 84/169 (49.70%), Postives = 116/169 (68.64%), Query Frame = 3 
Query:  156 KDIKICLIGDSNVGKTCLALRFVRGKFESEVKSTIAASFFTKVLTVDGHGVNLHIWDTAGQERFHSMAPIYYRGAAAAIIVYDITSKTSFLGAKRWMKELQKHGPENIVLVIAANKNDLEDKREVLEQTGRDFANEAGAIFRECSALNAFNVTSIFEVIGQKLLSSDEH 662
            +++K+CL+GD+ VGK+ +  RFV+  F+  +  TI ASF TK +          IWDTAGQERFHS+AP+YYRG+AAA+IVYDIT + SF   K+W+KEL++HGPENIV+ IA NK DL D REV  +  +++A   GAI  E SA NA N+  +F+ I +++   D H
Sbjct:    4 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPH 172
The following BLAST results are available for this feature:
BLAST of TCONS_00016398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB315.051e-5649.70Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
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