(Irx) Iroquois protein (polypeptide) - C. hemisphaerica

Overview
Name(Irx) Iroquois protein
Unique NameTCONS_00016543-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016543-protein ID=TCONS_00016543-protein|Name=(Irx) Iroquois protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MSASVSGPKPLFPAPIPGQTMLFPAPSPNHRCDHHNRGSGSLRGLSHSSR
CSCDSSYTTPSGFSRLLPALSSNESSVNPSNLTQNEPWLRLPSSNSRFNY
DSLLLNSFPLYGKFNGESYPSIDYALLANARRKNATRETTSTLKQWLNEH
KKNPYPTKGEKVMLAILTKMTLTQVSTWFANARRRLKKENKMTWSPRKKS
GEKKSDDKDDSCSDSDLEGMDVDVDGDNDEVISKGPGEDSINEKTVSSAE
VAAINSERPSVIRTLESPTFNEIRDRFKGEPSPVNDLQKWVNGCFEADSN
EVANDYPQELTPPTTPIESKVTTFTSQKLFEAFDAAKQGKNKDNTPPPSI
KDDISPAIIFSSKQPVLSTREITTISTSVIEHPRSIPGIITPQPSPKNET
EFFIPKPKLDTPLLSEHTMPPILDERITPPPMTPIIRSIEEPKVETNKKT
DPVRIQGLTTSRELEAVMALTNLFHS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009244XLOC_009244Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016543TCONS_00016543Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR008422Homeobox_KN_domain
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 128..193
e-value: 5.7E-11
score: 52.4
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 126..189
score: 12.924
NoneNo IPR availableGENE3D1.10.10.60coord: 113..192
e-value: 1.4E-14
score: 53.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..248
NoneNo IPR availableCDDcd00086homeodomaincoord: 131..190
e-value: 1.31508E-12
score: 61.8756
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 146..185
e-value: 1.3E-14
score: 53.7
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 164..187
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 131..195

Blast
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BLAST of (Irx) Iroquois protein vs. Swiss-Prot (Human)
Match: IRX6 (Iroquois-class homeodomain protein IRX-6 OS=Homo sapiens GN=IRX6 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 1.451e-40
Identity = 68/99 (68.69%), Postives = 82/99 (82.83%), Query Frame = 0 
Query:  112 GKFNGESYPSIDYALLANARRKNATRETTSTLKQWLNEHKKNPYPTKGEKVMLAILTKMTLTQVSTWFANARRRLKKENKMTWSPRKKSGEKKSDDKDD 210
            G++  E Y +++  L    RRKNATRETTSTLK WLNEH+KNPYPTKGEK+MLAI+TKMTLTQVSTWFANARRRLKKENKMTW+P+ K GE++  +  +
Sbjct:  132 GQYQYERYGAVE--LSGAGRRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPKNKGGEERKAEGGE 228
The following BLAST results are available for this feature:
BLAST of (Irx) Iroquois protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IRX61.451e-4068.69Iroquois-class homeodomain protein IRX-6 OS=Homo s... [more]
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