TCONS_00016543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016543
Unique NameTCONS_00016543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3096

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016543 ID=TCONS_00016543|Name=TCONS_00016543|organism=Clytia hemisphaerica|type=transcript|length=3096bp
TTTTGAACCCGCGCTCTTCACCGCAATGCtttttacacgtttttctttga
aacccGCCATGCGAATATCGAAAGTCCCAACGGTGGAGTGCCGTAAAAAG
TCTCTACGACTGTGACGAAAAAAAGCACCCAGATAGGCGGAGCACTTGTC
AAAAATGTCTCGTTCACATATCAACTTTTTCAGACAACAATAGAAGATTT
GTCTCGTACATATAATTGAGACAACCAATCAGATCGCAGGATTTACGAAT
TCTGTGCTCTGATTGGCTCATTTTCATGTAGCTCGATGTCGAAACATGAA
GTGAACATAAGTAATTACAGAAAAAGCTCATAAGGGAAAAACACGAACTA
AACTCAGTCATAAAGTGTATAAAATTGGCATTTTATTACTGCAAGATAGC
ATTATTTGAcgattattttgaaattatacattATTTTATGCTGTGGCTTG
GAGGACAAGTAGATTTTTACGAAAATATCAGATGTTTTGAGTGAGCTTTG
ATGAGAAGTtgtaatttttgaactttttgaaacgAGAATGTCTGCATCAG
TTTCTGGACCAAAACCTTTGTTTCCTGCACCGATACCTGGTCAAACTATG
TTATTCCCTGCTCCCTCACCAAACCATAGATGTGATCATCATAATCGAGG
ATCTGGTAGTTTGAGGGGTCTTTCACACTCATCGCGGTGTTCATGCGACA
GCAGTTATACCACTCCCTCTGGCTTTAGCAGACTTCTTCCTGCATTATCA
TCAAACGAATCCAGTGTGAATCCATCTAATCTTACACAAAATGAGCCTTG
GCTACGATTGCCCAGCTCAAATTCAAGATTCAACTATGATTCATTATTGC
TGAACAGTTTCCCATTGTATGGAAAATTCAATGGAGAAAGTTACCCATCA
ATAGACTATGCATTGCTTGCAAATGCTAGAAGGAAAAATGCTACACGAGA
AACAACTAGTACTCTGAAACAATGGCTAAACGAACACAAGAAAAATCCTT
ACCCAACAAAAGGTGAAAAAGTGATGCTGGCcatattgacaaaaatgaca
TTGACACAAGTTTCAACTTGGTTTGCTAATGCTCGACGACGActaaaaaa
agagaataaaatgACCTGGTCTCCAAGAAAGAAAAGCGGAGAAAAGAAAT
CCGATGATAAAGATGATAGTTGTAGTGATTCAGATCTAGAAGGAATGGAC
GTGGATGTTGATGGGGATAACGATGAAGTTATTTCTAAAGGTCCAGGAGA
GGATTCAATCAACGAAAAGACTGTCAGCAGTGCAGAAGTAGCAGCTATCA
ATAGTGAACGGCCAAGtgttataagaacattagaATCACCAACATTTAAT
GAAATAAGAGACAGATTTAAAGGAGAACCATCTCCTGTTAATGATTTACA
GAAATGGGTTAATGGTTGTTTTGAAGCAGATTCTAATGAAGTTGCAAACG
ATTATCCTCAAGAACTTACACCACCTACAACCCCTATAGAAAGTAAAGTA
ACAACATTTACAtcacaaaaactttttgaagcatTTGATGCTgcaaaaca
aggaaaaaataAAGACAATACACCTCCTCCTTCCATAAAGGATGATATCT
CTCCTGCAATTATATTTTCTTCTAAGCAACCAGTATTATCAACGCGAGAA
ATCACCACAATATCAACAAGTGTAATTGAACATCCAAGATCTATACCAGG
AATAATAACACCACAACCATCACCAAAAAACGAAACTGaattttttattc
caaaacCAAAACTTGACACACCGCTACTAAGTGAACATACCATGCCACCA
ATCTTAGACGAGCGAATAACACCACCACCGATGACGCCTATTATAAGAAG
TATAGAAGAACCAAAAGTAGAAACTAATAAAAAAACAGACCCAGTAAGga
taCAAGGTTTGACAACATCTCGAGAGCTTGAAGCTGTAATGGCATTGACG
AATTTATTCCATTCCTGATGCAAAATCTCATGTATTTTATATGCCTGGAA
AATGCTGGGACACCTTCTGATCAATGCATTCACTTTTCCGGTTTTGGATC
GTATCTTTCAAAAtagactttttatttttgtttccattttttgtaaatac
aagaaaaattgtttgatctttcaaaatttattatttttttgactaaCAAA
TCTTTAAAGAACATTTGAGTAGCTATTAAAAACATTAGATGTGCTGATTT
AGAGGTACTAGtttataaattatatttttgctGTGTTTTACATAGTGAGA
TAGTGTTTTCTTTTAGGCTTGATAAACAACTTTATCAAACCTTTTAAGAA
TTTAGGGAAATGATAGTTTGATAGCTCCAAGCAATTCTatcattttcaag
atttaagatatttttattacaaaaataaagattatttgttttattttgtt
tctgttttgtttattttattgacGTTATtcgagtttttcattttctagac
TGTAAGTCTTTCTTTGTATGTTTGACTTCGAGTTCTTTGAACATTTTGAC
TCCTTTCGCTCCCCTTCATTTGGCGTTTTTAAGCATTCAAATTTGTAGAT
AATTTTAGACACACTTTATATATTAAATTCGTTTTCTTTAGTGTAGATGC
AACTTTGTAATAACATTTCTCTTTTTAAAGCTGCCATGaatttgttttat
gttttaaaatttcctGGATCATTTTCCAAACGGTATTATTTGGGAAGGAA
TCTTTTAACATACCctatttttacaagttcttaGTCCTTCTTGGAATCTG
ATTCTATTGTGATTCTCAAGGATGTTATTTTAAGGAAGTTTTGGGTAGAA
TTGAACATTGTgttattttctgtttttatcTTTATACTTCCAAGAAGAGA
AACCGTTTTCTatatttctattgaaaatttcttcactttttcaAGGGCTT
CATAATGAACATTTCATAAATTTACGGCAGCATGAAAAAGAGATTTTATA
CATATAGTGTTTTGTTTTTCCCCAAGAAATATCTTGTTGTAAATATTTTG
GTTTACTTGTTGTAACATACAAGTTTTACAGATCTATTTTAAATTATTAG
CTCGCAAAAATGTTTATAGATTTAAATAAAAGCTCAAAGATAAAag
Run BLAST on NCBI

protein sequence of (Irx) Iroquois protein

>TCONS_00016543-protein ID=TCONS_00016543-protein|Name=(Irx) Iroquois protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MSASVSGPKPLFPAPIPGQTMLFPAPSPNHRCDHHNRGSGSLRGLSHSSR
CSCDSSYTTPSGFSRLLPALSSNESSVNPSNLTQNEPWLRLPSSNSRFNY
DSLLLNSFPLYGKFNGESYPSIDYALLANARRKNATRETTSTLKQWLNEH
KKNPYPTKGEKVMLAILTKMTLTQVSTWFANARRRLKKENKMTWSPRKKS
GEKKSDDKDDSCSDSDLEGMDVDVDGDNDEVISKGPGEDSINEKTVSSAE
VAAINSERPSVIRTLESPTFNEIRDRFKGEPSPVNDLQKWVNGCFEADSN
EVANDYPQELTPPTTPIESKVTTFTSQKLFEAFDAAKQGKNKDNTPPPSI
KDDISPAIIFSSKQPVLSTREITTISTSVIEHPRSIPGIITPQPSPKNET
EFFIPKPKLDTPLLSEHTMPPILDERITPPPMTPIIRSIEEPKVETNKKT
DPVRIQGLTTSRELEAVMALTNLFHS
Run BLAST on NCBI

transcript from alignment at sc0000241:344455..348445+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016543 ID=TCONS_00016543|Name=TCONS_00016543|organism=Clytia hemisphaerica|type=transcript|length=3991bp|location=Sequence derived from alignment at sc0000241:344455..348445+ (Clytia hemisphaerica)
TTTTGAACCCGCGCTCTTCACCGCAATGCtttttacacgtttttctttga
aacccGCCATGCGAATATCGAAAGTCCCAACGGTGGAGTGCCGTAAAAAG
TCTCTACGACTGTGACGAAAAAAAGCACCCAGATAGGCGGAGCACTTGTC
AAAAATGTCTCGTTCACATATCAACTTTTTCAGACAACAATAGAAGATTT
GTCTCGTACATATAATTGAGACAACCAATCAGATCGCAGGATTTACGAAT
TCTGTGCTCTGATTGGCTCATTTTCATGTAGCTCGATGTCGAAACATGAA
GTGAACATAAGTAATTACAGAAAAAGCTCATAAGGGAAAAACACGAACTA
AACTCAGTCATAAAGTGTATAAAATTGGCATTTTATTACTGCAAGATAGC
ATTATTTGAcgattattttgaaattatacattATTTTATGCTGTGGCTTG
GAGGACAAGTAGATTTTTACGAAAATATCAGATGTTTTGAGTGAGCTTTG
ATGAGAAGTtgtaatttttgaactttttgaaacgAGAATGTCTGCATCAG
TTTCTGGACCAAAACCTTTGTTTCCTGCACCGATACCTGGTCAAGTAAGT
TTTTCCTGATAGTTTATCATATTTCCAATCCAGCAATGTGTCTTTATTAA
AATTAAACCCTTAATGTCTGGAGATATCTGCACTGTCTCGTTTTTTTCAG
CTAGGTCATCAGGACCaaataaattgaatttttggttgattttattgttg
taatttttttttattttggtacaTTTTAGACTATGTTATTCCCTGCTCCC
TCACCAAACCATAGATGTGATCATCATAATCGAGGATCTGGTAGTTTGAG
GGGTCTTTCACACTCATCGCGGTGTTCATGCGACAGCAGTTATACCACTC
CCTCTGGCTTTAGCAGACTTCTTCCTGCATTATCATCAAACGAATCCAGT
GTGAATCCATCTAATCTTACAGTAAggattttcataattttgtagTTTGA
GGGTTCTTTCAGTTTTCAAGCTTTACAGATGAACCTTATAACCAGAGCAC
TTGCACGGAATTCCCACTTGCACAATGTTTTGACGTCTcagtttcaaaaa
agtctcGATTACTACGGCCTCGTTCATCCGaactttttactttgtttttg
ttttgattttgggaaaaattttccTGACTGACTTTTTTATCTGACTTTTC
AGCAAAATGAGCCTTGGCTACGATTGCCCAGCTCAAATTCAAGATTCAAC
TATGATTCATTATTGCTGAACAGTTTCCCATTGTATGGAAAATTCAATGG
AGAAAGGTATAAACTTATTAAACaaacttttgtcatttttgtaattttga
taaTCTGTATCTGTAAGAGTAGGCTATAACTTATAGTCATCATCTAAAAA
CATTTTGAGGGGGTGTGATGAATAATAATGCTTGACCTTGTTTGATAATG
AATTGTTTCTATTTTCTAGTTACCCATCAATAGACTATGCATTGCTTGCA
AATGCTAGAAGGAAAAATGCTACACGAGAAACAACTAGTACTCTGAAACA
ATGGCTAAACGAACACAAGAAAAATCCTTACCCAACAAAAGGTGAAAAAG
TGATGCTGGCcatattgacaaaaatgacaTTGACACAAGTTTCAACTTGG
TTTGCTAATGCTCGACGACGActaaaaaaagagaataaaatgACCTGGTC
TCCAAGAAAGAAAAGCGGAGAAAAGAAATCCGATGATAAAGATGATAGTT
GTAGTGATTCAGATCTAGAAGGAATGGACGTGGATGTTGATGGGGATAAC
GATGAAGTTATTTCTAAAGGTATGATATATTTTGATATGAAGCATCaaac
aaagacattttctaAATTCTCTATTCTATTCTTTAAAAGATTTCAGATCA
acagaaattatttttattgtatGTTTTGCACTTTGTTTTGCGAACATATC
ATCATTTAACATTTTGTCCCTTTTTTTACTTTCAGGTCCAGGAGAGGATT
CAATCAACGAAAAGACTGTCAGCAGTGCAGAAGTAGCAGCTATCAATAGT
GAACGGCCAAGtgttataagaacattagaATCACCAACATTTAATGAAAT
AAGAGACAGATTTAAAGGAGAACCATCTCCTGTTAATGATTTACAGAAAT
GGGTTAATGGTTGTTTTGAAGCAGATTCTAATGAAGTTGCAAACGATTAT
CCTCAAGAACTTACACCACCTACAACCCCTATAGAAAGTAAAGTAACAAC
ATTTACAtcacaaaaactttttgaagcatTTGATGCTgcaaaacaaggaa
aaaataAAGACAATACACCTCCTCCTTCCATAAAGGATGATATCTCTCCT
GCAATTATATTTTCTTCTAAGCAACCAGTATTATCAACGCGAGAAATCAC
CACAATATCAACAAGTGTAATTGAACATCCAAGATCTATACCAGGAATAA
TAACACCACAACCATCACCAAAAAACGAAACTGaattttttattccaaaa
cCAAAACTTGACACACCGCTACTAAGTGAACATACCATGCCACCAATCTT
AGACGAGCGAATAACACCACCACCGATGACGCCTATTATAAGAAGTATAG
AAGAACCAAAAGTAGAAACTAATAAAAAAACAGACCCAGTAAGGTATGTA
GTCTTACAATGTTTATAATTCTGTGTTTTTTCACTTAAGGCTATTTGGAA
AATAGATGTTTGTTTTTACAAGACCCTGATGAAATGAGGAACTGATGAtg
attcaaaaagttttgaaaatatatttttcatttcatttttcaggataCAA
GGTTTGACAACATCTCGAGAGCTTGAAGCTGTAATGGCATTGACGAATTT
ATTCCATTCCTGATGCAAAATCTCATGTATTTTATATGCCTGGAAAATGC
TGGGACACCTTCTGATCAATGCATTCACTTTTCCGGTTTTGGATCGTATC
TTTCAAAAtagactttttatttttgtttccattttttgtaaatacaagaa
aaattgtttgatctttcaaaatttattatttttttgactaaCAAATCTTT
AAAGAACATTTGAGTAGCTATTAAAAACATTAGATGTGCTGATTTAGAGG
TACTAGtttataaattatatttttgctGTGTTTTACATAGTGAGATAGTG
TTTTCTTTTAGGCTTGATAAACAACTTTATCAAACCTTTTAAGAATTTAG
GGAAATGATAGTTTGATAGCTCCAAGCAATTCTatcattttcaagattta
agatatttttattacaaaaataaagattatttgttttattttgtttctgt
tttgtttattttattgacGTTATtcgagtttttcattttctagacTGTAA
GTCTTTCTTTGTATGTTTGACTTCGAGTTCTTTGAACATTTTGACTCCTT
TCGCTCCCCTTCATTTGGCGTTTTTAAGCATTCAAATTTGTAGATAATTT
TAGACACACTTTATATATTAAATTCGTTTTCTTTAGTGTAGATGCAACTT
TGTAATAACATTTCTCTTTTTAAAGCTGCCATGaatttgttttatgtttt
aaaatttcctGGATCATTTTCCAAACGGTATTATTTGGGAAGGAATCTTT
TAACATACCctatttttacaagttcttaGTCCTTCTTGGAATCTGATTCT
ATTGTGATTCTCAAGGATGTTATTTTAAGGAAGTTTTGGGTAGAATTGAA
CATTGTgttattttctgtttttatcTTTATACTTCCAAGAAGAGAAACCG
TTTTCTatatttctattgaaaatttcttcactttttcaAGGGCTTCATAA
TGAACATTTCATAAATTTACGGCAGCATGAAAAAGAGATTTTATACATAT
AGTGTTTTGTTTTTCCCCAAGAAATATCTTGTTGTAAATATTTTGGTTTA
CTTGTTGTAACATACAAGTTTTACAGATCTATTTTAAATTATTAGCTCGC
AAAAATGTTTATAGATTTAAATAAAAGCTCAAAGATAAAag

Coding sequence (CDS) from alignment at sc0000241:344455..348445+

>TCONS_00016543 ID=TCONS_00016543|Name=TCONS_00016543|organism=Clytia hemisphaerica|type=CDS|length=8586bp|location=Sequence derived from alignment at sc0000241:344455..348445+ (Clytia hemisphaerica)
ATGTCTGCATCAGTTTCTGGACCAAAACCTTTGTTTCCTGCACCGATACC
TGGTCAAACTATGTTATTCCCTGCTCCCTCACCAAACCATAGATGTGATC
ATCATAATCGAGGATCTGGTAGTTTGAGGGGTCTTTCACACTCATCGCGG
TGTTCATGCGACAGCAGTTATACCACTCCCTCTGGCTTTAGCAGACTTCT
TCCTGCATTATCATCAAACGAATCCAGTGTGAATCCATCTAATCTTACAC
AAAATGAGCCTTGGCTACGATTGCCCAGCTCAAATTCAAGATTCAACTAT
GATTCATTATTGCTGAACAGTTTCCCATTGTATGGAAAATTCAATGGAGA
AAGTTACCCATCAATAGACTATGCATTGCTTGCAAATGCTAGAAGGAAAA
ATGCTACACGAGAAACAACTAGTACTCTGAAACAATGGCTAAACGAACAC
AAGAAAAATCCTTACCCAACAAAAGGTGAAAAAGTGATGCTGGCcatatt
gacaaaaatgacaTTGACACAAGTTTCAACTTGGTTTGCTAATGCTCGAC
GACGActaaaaaaagagaataaaatgACCTGGTCTCCAAGAAAGAAAAGC
GGAGAAAAGAAATCCGATGATAAAGATGATAGTTGTAGTGATTCAGATCT
AGAAGGAATGGACGTGGATGTTGATGGGGATAACGATGAAGTTATTTCTA
AAGGTCCAGGAGAGGATTCAATCAACGAAAAGACTGTCAGCAGTGCAGAA
GTAGCAGCTATCAATAGTGAACGGCCAAGtgttataagaacattagaATC
ACCAACATTTAATGAAATAAGAGACAGATTTAAAGGAGAACCATCTCCTG
TTAATGATTTACAGAAATGGGTTAATGGTTGTTTTGAAGCAGATTCTAAT
GAAGTTGCAAACGATTATCCTCAAGAACTTACACCACCTACAACCCCTAT
AGAAAGTAAAGTAACAACATTTACAtcacaaaaactttttgaagcatTTG
ATGCTgcaaaacaaggaaaaaataAAGACAATACACCTCCTCCTTCCATA
AAGGATGATATCTCTCCTGCAATTATATTTTCTTCTAAGCAACCAGTATT
ATCAACGCGAGAAATCACCACAATATCAACAAGTGTAATTGAACATCCAA
GATCTATACCAGGAATAATAACACCACAACCATCACCAAAAAACGAAACT
GaattttttattccaaaacCAAAACTTGACACACCGCTACTAAGTGAACA
TACCATGCCACCAATCTTAGACGAGCGAATAACACCACCACCGATGACGC
CTATTATAAGAAGTATAGAAGAACCAAAAGTAGAAACTAATAAAAAAACA
GACCCAGTAAGgataCAAGGTTTGACAACATCTCGAGAGCTTGAAGCTGT
AATGGCATTGACGAATTTATTCCATTCCTGAATGTCTGCATCAGTTTCTG
GACCAAAACCTTTGTTTCCTGCACCGATACCTGGTCAAACTATGTTATTC
CCTGCTCCCTCACCAAACCATAGATGTGATCATCATAATCGAGGATCTGG
TAGTTTGAGGGGTCTTTCACACTCATCGCGGTGTTCATGCGACAGCAGTT
ATACCACTCCCTCTGGCTTTAGCAGACTTCTTCCTGCATTATCATCAAAC
GAATCCAGTGTGAATCCATCTAATCTTACACAAAATGAGCCTTGGCTACG
ATTGCCCAGCTCAAATTCAAGATTCAACTATGATTCATTATTGCTGAACA
GTTTCCCATTGTATGGAAAATTCAATGGAGAAAGTTACCCATCAATAGAC
TATGCATTGCTTGCAAATGCTAGAAGGAAAAATGCTACACGAGAAACAAC
TAGTACTCTGAAACAATGGCTAAACGAACACAAGAAAAATCCTTACCCAA
CAAAAGGTGAAAAAGTGATGCTGGCcatattgacaaaaatgacaTTGACA
CAAGTTTCAACTTGGTTTGCTAATGCTCGACGACGActaaaaaaagagaa
taaaatgACCTGGTCTCCAAGAAAGAAAAGCGGAGAAAAGAAATCCGATG
ATAAAGATGATAGTTGTAGTGATTCAGATCTAGAAGGAATGGACGTGGAT
GTTGATGGGGATAACGATGAAGTTATTTCTAAAGGTCCAGGAGAGGATTC
AATCAACGAAAAGACTGTCAGCAGTGCAGAAGTAGCAGCTATCAATAGTG
AACGGCCAAGtgttataagaacattagaATCACCAACATTTAATGAAATA
AGAGACAGATTTAAAGGAGAACCATCTCCTGTTAATGATTTACAGAAATG
GGTTAATGGTTGTTTTGAAGCAGATTCTAATGAAGTTGCAAACGATTATC
CTCAAGAACTTACACCACCTACAACCCCTATAGAAAGTAAAGTAACAACA
TTTACAtcacaaaaactttttgaagcatTTGATGCTgcaaaacaaggaaa
aaataAAGACAATACACCTCCTCCTTCCATAAAGGATGATATCTCTCCTG
CAATTATATTTTCTTCTAAGCAACCAGTATTATCAACGCGAGAAATCACC
ACAATATCAACAAGTGTAATTGAACATCCAAGATCTATACCAGGAATAAT
AACACCACAACCATCACCAAAAAACGAAACTGaattttttattccaaaac
CAAAACTTGACACACCGCTACTAAGTGAACATACCATGCCACCAATCTTA
GACGAGCGAATAACACCACCACCGATGACGCCTATTATAAGAAGTATAGA
AGAACCAAAAGTAGAAACTAATAAAAAAACAGACCCAGTAAGgataCAAG
GTTTGACAACATCTCGAGAGCTTGAAGCTGTAATGGCATTGACGAATTTA
TTCCATTCCTGAATGTCTGCATCAGTTTCTGGACCAAAACCTTTGTTTCC
TGCACCGATACCTGGTCAAACTATGTTATTCCCTGCTCCCTCACCAAACC
ATAGATGTGATCATCATAATCGAGGATCTGGTAGTTTGAGGGGTCTTTCA
CACTCATCGCGGTGTTCATGCGACAGCAGTTATACCACTCCCTCTGGCTT
TAGCAGACTTCTTCCTGCATTATCATCAAACGAATCCAGTGTGAATCCAT
CTAATCTTACACAAAATGAGCCTTGGCTACGATTGCCCAGCTCAAATTCA
AGATTCAACTATGATTCATTATTGCTGAACAGTTTCCCATTGTATGGAAA
ATTCAATGGAGAAAGTTACCCATCAATAGACTATGCATTGCTTGCAAATG
CTAGAAGGAAAAATGCTACACGAGAAACAACTAGTACTCTGAAACAATGG
CTAAACGAACACAAGAAAAATCCTTACCCAACAAAAGGTGAAAAAGTGAT
GCTGGCcatattgacaaaaatgacaTTGACACAAGTTTCAACTTGGTTTG
CTAATGCTCGACGACGActaaaaaaagagaataaaatgACCTGGTCTCCA
AGAAAGAAAAGCGGAGAAAAGAAATCCGATGATAAAGATGATAGTTGTAG
TGATTCAGATCTAGAAGGAATGGACGTGGATGTTGATGGGGATAACGATG
AAGTTATTTCTAAAGGTCCAGGAGAGGATTCAATCAACGAAAAGACTGTC
AGCAGTGCAGAAGTAGCAGCTATCAATAGTGAACGGCCAAGtgttataag
aacattagaATCACCAACATTTAATGAAATAAGAGACAGATTTAAAGGAG
AACCATCTCCTGTTAATGATTTACAGAAATGGGTTAATGGTTGTTTTGAA
GCAGATTCTAATGAAGTTGCAAACGATTATCCTCAAGAACTTACACCACC
TACAACCCCTATAGAAAGTAAAGTAACAACATTTACAtcacaaaaacttt
ttgaagcatTTGATGCTgcaaaacaaggaaaaaataAAGACAATACACCT
CCTCCTTCCATAAAGGATGATATCTCTCCTGCAATTATATTTTCTTCTAA
GCAACCAGTATTATCAACGCGAGAAATCACCACAATATCAACAAGTGTAA
TTGAACATCCAAGATCTATACCAGGAATAATAACACCACAACCATCACCA
AAAAACGAAACTGaattttttattccaaaacCAAAACTTGACACACCGCT
ACTAAGTGAACATACCATGCCACCAATCTTAGACGAGCGAATAACACCAC
CACCGATGACGCCTATTATAAGAAGTATAGAAGAACCAAAAGTAGAAACT
AATAAAAAAACAGACCCAGTAAGgataCAAGGTTTGACAACATCTCGAGA
GCTTGAAGCTGTAATGGCATTGACGAATTTATTCCATTCCTGAATGTCTG
CATCAGTTTCTGGACCAAAACCTTTGTTTCCTGCACCGATACCTGGTCAA
ACTATGTTATTCCCTGCTCCCTCACCAAACCATAGATGTGATCATCATAA
TCGAGGATCTGGTAGTTTGAGGGGTCTTTCACACTCATCGCGGTGTTCAT
GCGACAGCAGTTATACCACTCCCTCTGGCTTTAGCAGACTTCTTCCTGCA
TTATCATCAAACGAATCCAGTGTGAATCCATCTAATCTTACACAAAATGA
GCCTTGGCTACGATTGCCCAGCTCAAATTCAAGATTCAACTATGATTCAT
TATTGCTGAACAGTTTCCCATTGTATGGAAAATTCAATGGAGAAAGTTAC
CCATCAATAGACTATGCATTGCTTGCAAATGCTAGAAGGAAAAATGCTAC
ACGAGAAACAACTAGTACTCTGAAACAATGGCTAAACGAACACAAGAAAA
ATCCTTACCCAACAAAAGGTGAAAAAGTGATGCTGGCcatattgacaaaa
atgacaTTGACACAAGTTTCAACTTGGTTTGCTAATGCTCGACGACGAct
aaaaaaagagaataaaatgACCTGGTCTCCAAGAAAGAAAAGCGGAGAAA
AGAAATCCGATGATAAAGATGATAGTTGTAGTGATTCAGATCTAGAAGGA
ATGGACGTGGATGTTGATGGGGATAACGATGAAGTTATTTCTAAAGGTCC
AGGAGAGGATTCAATCAACGAAAAGACTGTCAGCAGTGCAGAAGTAGCAG
CTATCAATAGTGAACGGCCAAGtgttataagaacattagaATCACCAACA
TTTAATGAAATAAGAGACAGATTTAAAGGAGAACCATCTCCTGTTAATGA
TTTACAGAAATGGGTTAATGGTTGTTTTGAAGCAGATTCTAATGAAGTTG
CAAACGATTATCCTCAAGAACTTACACCACCTACAACCCCTATAGAAAGT
AAAGTAACAACATTTACAtcacaaaaactttttgaagcatTTGATGCTgc
aaaacaaggaaaaaataAAGACAATACACCTCCTCCTTCCATAAAGGATG
ATATCTCTCCTGCAATTATATTTTCTTCTAAGCAACCAGTATTATCAACG
CGAGAAATCACCACAATATCAACAAGTGTAATTGAACATCCAAGATCTAT
ACCAGGAATAATAACACCACAACCATCACCAAAAAACGAAACTGaatttt
ttattccaaaacCAAAACTTGACACACCGCTACTAAGTGAACATACCATG
CCACCAATCTTAGACGAGCGAATAACACCACCACCGATGACGCCTATTAT
AAGAAGTATAGAAGAACCAAAAGTAGAAACTAATAAAAAAACAGACCCAG
TAAGgataCAAGGTTTGACAACATCTCGAGAGCTTGAAGCTGTAATGGCA
TTGACGAATTTATTCCATTCCTGAATGTCTGCATCAGTTTCTGGACCAAA
ACCTTTGTTTCCTGCACCGATACCTGGTCAAACTATGTTATTCCCTGCTC
CCTCACCAAACCATAGATGTGATCATCATAATCGAGGATCTGGTAGTTTG
AGGGGTCTTTCACACTCATCGCGGTGTTCATGCGACAGCAGTTATACCAC
TCCCTCTGGCTTTAGCAGACTTCTTCCTGCATTATCATCAAACGAATCCA
GTGTGAATCCATCTAATCTTACACAAAATGAGCCTTGGCTACGATTGCCC
AGCTCAAATTCAAGATTCAACTATGATTCATTATTGCTGAACAGTTTCCC
ATTGTATGGAAAATTCAATGGAGAAAGTTACCCATCAATAGACTATGCAT
TGCTTGCAAATGCTAGAAGGAAAAATGCTACACGAGAAACAACTAGTACT
CTGAAACAATGGCTAAACGAACACAAGAAAAATCCTTACCCAACAAAAGG
TGAAAAAGTGATGCTGGCcatattgacaaaaatgacaTTGACACAAGTTT
CAACTTGGTTTGCTAATGCTCGACGACGActaaaaaaagagaataaaatg
ACCTGGTCTCCAAGAAAGAAAAGCGGAGAAAAGAAATCCGATGATAAAGA
TGATAGTTGTAGTGATTCAGATCTAGAAGGAATGGACGTGGATGTTGATG
GGGATAACGATGAAGTTATTTCTAAAGGTCCAGGAGAGGATTCAATCAAC
GAAAAGACTGTCAGCAGTGCAGAAGTAGCAGCTATCAATAGTGAACGGCC
AAGtgttataagaacattagaATCACCAACATTTAATGAAATAAGAGACA
GATTTAAAGGAGAACCATCTCCTGTTAATGATTTACAGAAATGGGTTAAT
GGTTGTTTTGAAGCAGATTCTAATGAAGTTGCAAACGATTATCCTCAAGA
ACTTACACCACCTACAACCCCTATAGAAAGTAAAGTAACAACATTTACAt
cacaaaaactttttgaagcatTTGATGCTgcaaaacaaggaaaaaataAA
GACAATACACCTCCTCCTTCCATAAAGGATGATATCTCTCCTGCAATTAT
ATTTTCTTCTAAGCAACCAGTATTATCAACGCGAGAAATCACCACAATAT
CAACAAGTGTAATTGAACATCCAAGATCTATACCAGGAATAATAACACCA
CAACCATCACCAAAAAACGAAACTGaattttttattccaaaacCAAAACT
TGACACACCGCTACTAAGTGAACATACCATGCCACCAATCTTAGACGAGC
GAATAACACCACCACCGATGACGCCTATTATAAGAAGTATAGAAGAACCA
AAAGTAGAAACTAATAAAAAAACAGACCCAGTAAGgataCAAGGTTTGAC
AACATCTCGAGAGCTTGAAGCTGTAATGGCATTGACGAATTTATTCCATT
CCTGAATGTCTGCATCAGTTTCTGGACCAAAACCTTTGTTTCCTGCACCG
ATACCTGGTCAAACTATGTTATTCCCTGCTCCCTCACCAAACCATAGATG
TGATCATCATAATCGAGGATCTGGTAGTTTGAGGGGTCTTTCACACTCAT
CGCGGTGTTCATGCGACAGCAGTTATACCACTCCCTCTGGCTTTAGCAGA
CTTCTTCCTGCATTATCATCAAACGAATCCAGTGTGAATCCATCTAATCT
TACACAAAATGAGCCTTGGCTACGATTGCCCAGCTCAAATTCAAGATTCA
ACTATGATTCATTATTGCTGAACAGTTTCCCATTGTATGGAAAATTCAAT
GGAGAAAGTTACCCATCAATAGACTATGCATTGCTTGCAAATGCTAGAAG
GAAAAATGCTACACGAGAAACAACTAGTACTCTGAAACAATGGCTAAACG
AACACAAGAAAAATCCTTACCCAACAAAAGGTGAAAAAGTGATGCTGGCc
atattgacaaaaatgacaTTGACACAAGTTTCAACTTGGTTTGCTAATGC
TCGACGACGActaaaaaaagagaataaaatgACCTGGTCTCCAAGAAAGA
AAAGCGGAGAAAAGAAATCCGATGATAAAGATGATAGTTGTAGTGATTCA
GATCTAGAAGGAATGGACGTGGATGTTGATGGGGATAACGATGAAGTTAT
TTCTAAAGGTCCAGGAGAGGATTCAATCAACGAAAAGACTGTCAGCAGTG
CAGAAGTAGCAGCTATCAATAGTGAACGGCCAAGtgttataagaacatta
gaATCACCAACATTTAATGAAATAAGAGACAGATTTAAAGGAGAACCATC
TCCTGTTAATGATTTACAGAAATGGGTTAATGGTTGTTTTGAAGCAGATT
CTAATGAAGTTGCAAACGATTATCCTCAAGAACTTACACCACCTACAACC
CCTATAGAAAGTAAAGTAACAACATTTACAtcacaaaaactttttgaagc
atTTGATGCTgcaaaacaaggaaaaaataAAGACAATACACCTCCTCCTT
CCATAAAGGATGATATCTCTCCTGCAATTATATTTTCTTCTAAGCAACCA
GTATTATCAACGCGAGAAATCACCACAATATCAACAAGTGTAATTGAACA
TCCAAGATCTATACCAGGAATAATAACACCACAACCATCACCAAAAAACG
AAACTGaattttttattccaaaacCAAAACTTGACACACCGCTACTAAGT
GAACATACCATGCCACCAATCTTAGACGAGCGAATAACACCACCACCGAT
GACGCCTATTATAAGAAGTATAGAAGAACCAAAAGTAGAAACTAATAAAA
AAACAGACCCAGTAAGgataCAAGGTTTGACAACATCTCGAGAGCTTGAA
GCTGTAATGGCATTGACGAATTTATTCCATTCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009244XLOC_009244Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
(Irx) Iroquois proteinTCONS_00016543-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016543-exon-sc0000241-1491911889:344455..345048TCONS_00016543-exon-sc0000241-1491911889:344455..345048Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1510915933:344455..345048TCONS_00016543-exon-sc0000241-1510915933:344455..345048Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1575043694:344455..345048TCONS_00016543-exon-sc0000241-1575043694:344455..345048Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1491911889:345234..345425TCONS_00016543-exon-sc0000241-1491911889:345234..345425Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1510915933:345234..345425TCONS_00016543-exon-sc0000241-1510915933:345234..345425Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1575043694:345234..345425TCONS_00016543-exon-sc0000241-1575043694:345234..345425Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1491911889:345657..345760TCONS_00016543-exon-sc0000241-1491911889:345657..345760Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1510915933:345657..345760TCONS_00016543-exon-sc0000241-1510915933:345657..345760Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1575043694:345657..345760TCONS_00016543-exon-sc0000241-1575043694:345657..345760Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1491911889:345924..346273TCONS_00016543-exon-sc0000241-1491911889:345924..346273Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1510915933:345924..346273TCONS_00016543-exon-sc0000241-1510915933:345924..346273Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1575043694:345924..346273TCONS_00016543-exon-sc0000241-1575043694:345924..346273Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1491911889:346440..347097TCONS_00016543-exon-sc0000241-1491911889:346440..347097Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1510915933:346440..347097TCONS_00016543-exon-sc0000241-1510915933:346440..347097Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1575043694:346440..347097TCONS_00016543-exon-sc0000241-1575043694:346440..347097Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1491911889:347248..348445TCONS_00016543-exon-sc0000241-1491911889:347248..348445Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1510915933:347248..348445TCONS_00016543-exon-sc0000241-1510915933:347248..348445Clytia hemisphaericaexon
TCONS_00016543-exon-sc0000241-1575043694:347248..348445TCONS_00016543-exon-sc0000241-1575043694:347248..348445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:344455..348445 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37942	4.26613	2.6854	2.12358	121.391	92.3496	52.8483	43.6335	30.4142	28.9249	18.501	24.7983	17.5717	17.9259	40.4025	63.7791	22.7308	24.953	36.1852	31.3858	5.34668	4.98982	42.3548	52.6104	34.6209	40.6482	53.0955	20.1232	49.1026	61.0477
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR008422Homeobox_KN_domain
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00016543 vs. Swiss-Prot (Human)
Match: IRX6 (Iroquois-class homeodomain protein IRX-6 OS=Homo sapiens GN=IRX6 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 9.953e-36
Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:  871 GKFNGESYPSIDYALLANARRKNATRETTSTLKQWLNEHKKNPYPTKGEKVMLAILTKMTLTQVSTWFANARRRLKKENKMTWSPR 1128
            G++  E Y +++  L    RRKNATRETTSTLK WLNEH+KNPYPTKGEK+MLAI+TKMTLTQVSTWFANARRRLKKENKMTW+P+
Sbjct:  132 GQYQYERYGAVE--LSGAGRRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPK 215
The following BLAST results are available for this feature:
BLAST of TCONS_00016543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IRX69.953e-3675.58Iroquois-class homeodomain protein IRX-6 OS=Homo s... [more]
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