TCONS_00016569-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016569-protein
Unique NameTCONS_00016569-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length134

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016569-protein ID=TCONS_00016569-protein|Name=TCONS_00016569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MTTIPKAKVSDEMKITHEDQKMINAFANKNAKHNELKNTVEKNKKALQNL
EDAGDELMMCDDTGSVPVQIGEVFLRMTPDDAQVYIDQQKEEIESEISKC
DKQIANYTQELKNLKVKLYAKFGNNINLEEEEES
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009263XLOC_009263Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016569TCONS_00016569Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016661PFDN4
IPR002777PFD_beta-like
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0016272 prefoldin complex
molecular_function GO:0051082 unfolded protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..117
NoneNo IPR availableCOILSCoilCoilcoord: 30..56
NoneNo IPR availableGENE3D1.10.287.370coord: 14..119
e-value: 2.5E-18
score: 65.7
NoneNo IPR availableSUPERFAMILY46579Prefoldincoord: 20..122
IPR016661Prefoldin, subunit 4PIRSFPIRSF016477Prefoldin_4coord: 1..130
e-value: 3.7E-37
score: 125.2
IPR002777Prefoldin beta-likePFAMPF01920Prefoldin_2coord: 20..124
e-value: 4.5E-19
score: 68.3

Blast
[Close]
BLAST of TCONS_00016569-protein vs. Swiss-Prot (Human)
Match: PFD4 (Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.332e-27
Identity = 51/123 (41.46%), Postives = 83/123 (67.48%), Query Frame = 0 
Query:   11 DEMKITHEDQKMINAFANKNAKHNELKNTVEKNKKALQNLEDAGDELMMCDDTG-SVPVQIGEVFLRMTPDDAQVYIDQQKEEIESEISKCDKQIANYTQELKNLKVKLYAKFGNNINLEEEE 132
            +++ +T EDQ+ IN FA   ++  ELK  +E  KK LQNLEDA D++M+ DD    +P QIG+VF+  + ++ Q  +++ K+ ++ EI   + ++ +  + L +LKV+LYAKFG+NINLE +E
Sbjct:   11 EDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEADE 133
The following BLAST results are available for this feature:
BLAST of TCONS_00016569-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PFD42.332e-2741.46Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 ... [more]
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