TCONS_00016569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016569
Unique NameTCONS_00016569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016569 ID=TCONS_00016569|Name=TCONS_00016569|organism=Clytia hemisphaerica|type=transcript|length=708bp
ataatatataattcaAACCTGTACTTTTGAATTGGTAAAAAGCGTTGGCT
AGGAGGAAATAGAATCAATATGACTACAATTCCAAAGGCAAAGGTCAGCG
ATGAGATGAAAATCACTCATGAGGACCAAAAGATGATCAATGCATTTGCC
AATAAGAATGCCAAACACAATGAGCTCAAAAATACTGTCGAGAAGAATAA
GaAAGCCCTTCAGAACTTGGAAGATGCAGGAGATGAACTTATGATGTGTG
ATGATACTGGTAGTGTCCCTGTTCAAATTGGAGAAGTCTTCCTTCGCATG
ACACCTGATGATGCCCAAGTATATATCGACCagcaaaaagaagaaattga
aagtgaaatctCTAAATGTGACAAACAGATTGCTAACTATACACAGGAAC
TGAAAAACTTGAAAGTCAAATTATACGCTAAATTTGGTAATAACATCAAC
CTAGAGGAAGAAGAGGAAAGTTAGgggatttattaaaatttataTTCTGT
TTTCATATTATGTATCTATAGACCATTTTTATTTCTCttaaatacatttt
ttgttaaattatgTATCCTattatttacgtttttttttctcttttgtttc
cttgcctccAGACAATTTTGATTATTCAGCAAGTTTCGGTTGATAAAAAA
TCGTTCTGTCATTATTTCTCTGCCACGTCAAACTTAAGCACGTTGGTTTC
ATTTTCGG
Run BLAST on NCBI

protein sequence of TCONS_00016569-protein

>TCONS_00016569-protein ID=TCONS_00016569-protein|Name=TCONS_00016569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
MTTIPKAKVSDEMKITHEDQKMINAFANKNAKHNELKNTVEKNKKALQNL
EDAGDELMMCDDTGSVPVQIGEVFLRMTPDDAQVYIDQQKEEIESEISKC
DKQIANYTQELKNLKVKLYAKFGNNINLEEEEES
Run BLAST on NCBI

transcript from alignment at sc0000243:26086..45209+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016569 ID=TCONS_00016569|Name=TCONS_00016569|organism=Clytia hemisphaerica|type=transcript|length=19124bp|location=Sequence derived from alignment at sc0000243:26086..45209+ (Clytia hemisphaerica)
ataatatataattcaAACCTGTACTTTTGAATTGGTAAAAAGCGTTGGCT
AGGGTACGTATTACGTTTTATTACGCCCTTTCTATCATACGCATTATACA
TTATACAAAAAATGCAGTCGGGTCCAGTCGGGTCTACCATTTCTCGACCT
ATGATGATGGCATGGATGTCGTTGGTCATTGGTCTGTTGGTGTGGTGTTC
AGTTTTCTTCGTGTTATTGTTGGCTTAggtgttttgtttgttttcttaaC
TTGTGTGTTGAGTTTTAAATAAAGGTGTTAGCCATGTCTATTCTGACAgc
agaaaaaggggggggggaccaagagcagccgccggcagatttttttgaaa
tagacTATCTGATCTTTATTcccaggagagtaaattttatggataaatct
aggtaggagagactttcctcaaaacacccaggtaaaatccaggggtcacC
TTAAAGACATCTGCTCTTAAAATCCAGAAGCttttccagggagcttcata
attttcttaaaaggtctcattttctaggacCCAATCGATGAAATCGATAC
GGGAAATCAATCGATAATAATCTATAGTgatcgataactaatcgataaac
aatcgatacTAAGACTTTACGTTCTTATCGATTGGattcgattgttatcg
attGATATCGATTAACAtggcgtcctccagctttttggtcccccctaata
agagctaaaatcccccatctggccttttccccccacctgtctttaaaatt
tgtGCTCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGCTGGATCGTCTGCTACG
CGAcctggaaaagttttgaaaggagGAAAAGGTGCATATTGTTGTATACC
CGAATGCAAGAGCAGCTTTTATAACAGTGACATGACCAAAACTGAAATTG
GATTTTTCAAGATCCCAACTAACCCTAAACGAAATCAAGAATGGAAACGA
ATCATTTACCGGTATCGACGAAAGGGAGGAAAAGATAAGTTCAAAATCAC
ATCTACAACAGTTATCTgtgaatttcattttaaagcagAGGACATTAAAG
TCACCCTTGGAACACATAAAAAGGTTTTAAGGAAAGGAGCAATACCAAGa
gtgttttcttttaaaaagccgAAAAAAGTAACATCAAGAAAATCACCTAA
AAAACGTTTATCCAAAATTTTCGACGATCCTGCTTGTAATACGATTCAAA
AGGAGCCAGAGAATAGAAACGTCAATGATATAAACGTCAATGATATAAAC
AATGAAGTAAACGAGATCAATGAACTGAAACAAAGAATTGAGGAACTTGA
ACAagaaaatttatctttaaaacTTGAAGTAgaagaactaaagaaaaatt
tttacaattatGATAACCTTTCAAAAGATAAGAAATTCTTCAAATCGGAA
ACAGGGCtaacggtggaaaattttacAGAGTTGCTATCACTCCTGGATGT
CAAAGAAAACtgtgaaaatatcaaattctaTGATTCTAAATTGAAAGGAG
CTGACGACATAACTTTGCCCCCAGGTAACAAGAAACCAGGTCCAAAGGTC
AAATTGTCTGCAGAAGATCAGCTCTTACTTGTACTGTCATGGCTGAAAGG
AGGATTTAATCTGAAACATTGTTCTTGGTTATTTAACTTGTCAGTACCCT
CAACATCAAGGTACATAATCACTTGGATCAACCTGATGTATTTCACCCTT
GGTTCAATACCAATATGGCCTTCTAAGCTACAGATAAAGGAAACTATGCC
AATATCGTTCAAAGAACTTTATCCCAAAACAAGATGTATTGTAGACTGTA
CTGAATTATTTTGCCAAAGACCATCTTCACTGGCAACTCAAAGTAACATG
TACTCTCAATATAAAAGTCACGTAACTTATAAAGGTTTGATTGGTATCGC
CCCTTCAGGATCAATTACTTTTGTCAGTCAACTTTATGAAGGGTCAATCT
CTGATAAAGAAATCGTTGATCGATCAGGATTATtgaataaaagtttttgg
gaaGAAGGAGATTCCTTGATGGCTGATCGTGGTTTTACAATTAAAGAGCT
TTTGGATCCTTTGAAGGTTGAACTCAATATCCCTGCCTTTCTAGAGGGAA
GGACACAGTTTACAACTGAAGAAGTTAAAGAAAGCCAGACAATAGCTTCA
GTTAGAATACATGTAGAGCGAGCTATTCAACGTGTTAAAAAATTTCGGCA
AATTAGAAACGAGATACCACTAGCCTTACATGGTTCAATAAACCAAATCT
GGACAGTAGCCTGTTTGCTATGCAATTTCATGTCACCATTgattcaaaaa
gattattaagaaattaaaacattaaCAGTTATTTACGTAGCTCAATAATA
tgtctttttgttttaaggttcttttgataaaatttgattatttttgcaaa
atcttATTGCTTATGATTCTACTTTCACAGTTTTCTTAATTGATACCACa
ggtttttatcaaatgaaataataagcaaaaaagttttgcCTAAGCCTTCC
TTCCATGGTCGTGAGTCACAATTGTAATTTAAGGGTTTTTTCTAATCAAC
AATGAAAATTGAAGTGAATTTATTTTCAAGACTTCCtcttagattttttt
ataaagttttacTCAAGACCATATCAGGTGGATGCAGGCaacatttaaaa
tctttttagagAGCTTTCGTTTTGGTAGGTCTAGAACTGAATACTCTctt
tgaaaatcagaaaaaggttTATGCAAAATAACTAGAGAATATACAATATG
TAAAATGCTGTAAAAATGAAGAGTTTCTCATAAAAAGcttctcaaaacaa
aatattcaaacaATAGGTCTTTTATGGTACACTCtaaatattgaatatta
ttaaagatgttttaacaaatattgttTGTAGAACTTATTTAGCTTGGTCA
CAAGATTCCGAAAATATGGCTCATCAAACTCTGTTCTCACTATCATCAAT
CCTTTATAGGTGTAGACAACAAAGTAGCAATATGATAATTGGGATAGCCC
CATAGCCAATTGAATTTGACTGTAGTAACCAAatttatgttgctttttta
aaaaaggtttccCATTTTTGTCTTTTCCAACACAGAAAGTTTCATCCTTT
AATAACATATCAGGGGTTGaattcctttttgtttttggGCATTTGATTTC
AATAAGTCCAGGAGAATCCTCGTTTTGATCAATAATTAAGCCATCAGGAC
TTGCTGCaagccaaaacaaaaaaggtTGTACTACAATTCCAGTTTctcga
atttcaatttttcgtttcaAAGTGTAAGAcatgtatttttcaaatttttc
cctGGCCACTGGCTCAAATTTTCGACCAAATTCAAACAAATCTTTCAAGA
AATTGGATATGGGcttttttttgccacaaaaGTCGTTTACTAATGTTTCA
AAATTCCTCTTGCGAATTAAAACTTTGTGACAGCTGCTTGAAGTGATTCT
ATTTTCTCGCTCTTTATGCCAAGCCTCATTCAAAGCTTGTCCAATGGTGT
TTTGTTCAATTTCTCGACATTTTTCTACAGTCTctggaaatattttagat
aatgTTGACAGTTCTGAATAGTTCAGTAAGCCCCAGTCTTTTGGAAAGTA
AGGACTTTTTGTGTTTATTACATTAATGGGTAAGAAAATATCTTCAATTA
CTTCTCTTCTTTCCACTGAAGCCTTGATACCAGCAAGGTTTGTGATGACC
ACAAAATTCTGTTCAAATACACCCAGTTGGTAAGATAAAGGACTTCCTGT
AAAAAAATCACCGAAAGTTGTTGGTGTTGCCCCCAATGAAAAATTCATAG
TGTGTGCATATCCTATTCTTTGGTCCTGTTGAAGAAGGTTCAAATGGGCT
TTGGCAGCCCTATGTACcaaattgtcaatttttgtgTTAATACGTGGGTT
GTAAAGAGTGCTTGAAACACCTCTGCTGTTTCCTTTTCGAATAGAAATGT
CCATGACCGCCTCAGGATACTTTAACTTGTCCGAGGGGTGGGTTCCCCAT
TGCCGTGGCCCGCTTGTGCAGGCAATATCCTCAGGAACTGTCTTTATCTC
ACGTAACGAAAAATCTGCTAGTTCAAATAACAGAGCCATTATATGATTGC
AATATGAAGAATTGCCTGCAGCGCAATCACACGTTCCACTGAAAACTTCT
CCATTAAGTCTATTTAGAACAACttccaaatgttttttttcttgtatCAT
GCTCGATCTACATTCAGCTTTGACAGTGAAAAATAGTGAGGAAGTCTTTG
TATACATTTGATCTTTTATAACATATCCttcgtttttgaattttaaacct
TGATCTCTTGTTTTGATGATTGATCGTGCATTTTTGCCACTCTTTTGTCG
ATGTAATTCGATCTctctttttgtaaacaaaggaaGATTAGTTAAATGTT
TAGTCCattcaatgttttgttctttttcaaCAATAATTTCAATAGANNNN
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NNNNNNNNNNNNNNNNNNNNNNNNGTGATTGGAGATTCCTTTGGCATTGT
GTTCTACGAAAGCCAGTTGTATACAATCTTTGGTTCACTAAACGAAAAAC
AATGTCTATTCTTCGTATTTTCATTCTGGAGTTAGGGCGGAAAATTGTTC
GCGTTAAAACGCGAATCGCCCTTTTGCGCCCCAAGTTGAAGGCGTTGTTA
AGTGATACGGAACCGAGAAATGGAAAGGAGTCTAATGTTAATAGTCACTC
ATTGTTCATACAATgtctttgtatattttgtatagTGATAATTTAGGAGT
TTATATGTTATGTATTATTTTCCAGAAGAAAATAGTGGGAAGGGTAAGGC
TACAAACACTTTAcaacaagataagaacatttaTTAAAGTAACGGACGCC
GCGGTCTCTCGTCCTTCCTAGGAAATGTCTTTGACAAAAGGGAATATTTC
TAAAGGCTTGATAATGAGACAGGGTACAGTATGAAACAAGACATAATTTC
CCGTTCGTTCATACGCTGTTCATTCTCTCGGAGGTCTCACATCCCCTGGC
TTAAATCAtctctgagacaggggtgcaaaTATTTCTGCGAGCAGAAATTG
GTAAACTAAAAGAGGCAAGAAAGTAtatcatatcaaaattttcataattt
tacttTCAAGTTACTTAACAAGGTACAAGGTTTGTGTCAAAATAACAATT
TGAAATGGGATTGGATATTCTTGGAGAAAATGTCTGATAGCAATATTTTA
GGGAAAGAAACTTTTGCAATTGGGCAAATTCGCAAGAATTTTGCATTTTG
TAAGAATTAACTTTCACAAATttagcttttcaaaatattttactgGAAAA
AACTATTGTAATTTGTTcagtttttttcagatttttagaaAAGTATATTT
TCGCAAGAATAGAGTTATATAAATAGGATCCCAATTTTGTCTCCATGAGA
CTTCTGCTTTTCATTTATAGATTGATCTAATTGACATGACCCGCGACCCA
GATGGTGAATTCAAATTTATTGGCCACATTGTGGACCATTTTGCCAAGTT
CCATGTCCTGTTTGCTCTTAAAACAAAGGAGCCCAAGGTTGTCGCCAAAA
ACATCAAAGTCCGCTATCTTTCTTATTTTGGATTGCCAAAAATTTTACAA
TCTGATAATGGGACTGAGTTTGTAGACCTGATAATCAAGGCAGTTGTTCT
TCTTTGGCCTGGCAATGCAAAAATTATCAATGGTTCAGTAGGGCACTCCC
AATCCCAAGGTAAACTTTTTTATAGTTTTAATGTTACATTAGGCACTATG
GATTTTATCACTTAATTCTTGCCGGAGTACGGGAAAATTCACTTTTATTA
AGCATTATTCCTAGAATTCATTAATTTATTTTCTAGTTGTAGTATAGGTG
TCGAAATACCGACAGTACTCTAAAGGGCCATAACctttaaagaaaatact
tttttttgcttCGTTTTTGCATTTCTGGAATCATCCTCAAATTCTGCGTC
GATCGGTAGGCAATTTGTAGGCACTTAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTAGGCACTTAAAGCAGAACCAAGGC
GGCTGGAGCCtttgaaagtcaaactttcgatgAAATTCAATGAGGTCAAA
ATTCTTAAAGTGGCTTGGCAGTGAACTTGTCAGTATTAGGTAATTTTTTT
CATCGGGACGGATCCTTGACCgggtcactgaaacaggggtgtatcgTACG
TTTTCTCTTATCATTTTGTCAACAAATTTTTGAGCCAACCAGAGCGTAAT
TGATAATCTTCTCCCGTCTCTGAAGTATCTGAGATTGTTCAGTACCTGAA
AtaaggagaaaacaaaaatatacgatGATCGGATTAATTTCTCTATTCTT
TTTATCGACTCAGCTATCACACCCAGTATCACTGCGAAAGTAGAAAAGGT
TAGCTTTTCACGGGGCATTTGTAGCGGTCGAATGAtacttgagacagggg
tattcaaTGGACGCTAAACGTCAAAAACAGTGTTCATTTAAAATGTCCGT
AAACAACGGGATATGAACACTGGGTTTTTTTCAAGCGCAATTTCTATTAA
CCTAACATGgcctgtgaaacaggggtgtgggTGTGGGTGTGCTAGACTCT
TCTTAGGTAAAGAAGAAATACGCACCTGGTGGGTGTGATAATTCAATGCT
TTTAGATTCAATGCTTTCTATCGTAACCGCGGAAAATAACGACCATATAA
TGTGTTTGATGACTCTATCGATCGATGCTtcgattaaaatttgatatttt
cgtaaGTTGTCCAGTTTCTCTAATgctcttcttttttaatcatttatttN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGCAAGCgttagataaaaaaacaaacttggatTTGGCTA
ATGTAGTCAGACCTTTCAGAGACGTTTCATTTTCTTACATTGCACTTTCT
ATCGTGCATTCAACCAAAACTTTTCATAGCGCACactaatcaaaatttta
ttatcaatGATACTAAACGTACTACCCAAATATATCTCCCTTAGgtatta
catttttatgacgctcTATCTAATGACTAATTACTTTGTGAGAATTGCAT
GAATTCAAATTATAACTTCGGCaaaaacgtaatttttgaaaagtggtatt
GCTCCACCACAAAATATAGAGAGTGTTTGTTTATGTTCCGAATGGCGCCC
CGTCAAATTCTATCCACTTCACCCCGAGACGAGTGACTCGATTTTCTTGT
ATTCGATTGAATGAAGATTGTTCCTCGTAGAAGaaacttttgacttttga
atatgaaattttctaaactcgcgaattagaccCCACTCGTCAAGCTCTGC
GGTATAATTAAGTGGTAGGTCTCGTCGGGAAGAGGTAATTTGCCCAAAAC
CTTCCAATTctatccgattcaccccgtccTATGGTAAGATTAATTACGAT
TTTTCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTTGGTTTTGTTGTTCGGATTGCTCAGAAATTTGG
TGCGAAGGCAATTCACCCGATTTgccgaaaaaccgcaaaattaaattccg
cgaaaagttcttcccgcaaaaatttcttcccttaaagtacGCTACGTACG
CTACGATATTATCGTGAGATACTATATTTCTGGTACACAGAGTAGCGATC
ATAAATACAGAAAATTAGCACAATTGATCGCAATCGATCTTAATCGATAT
TAACAATCGAATTCAATCGATGGctaatcgataataatcgaattTAATCG
ATGAAAATCGATACCAAtcgataataaaattttacgttCCTATCGATTGG
CCATCGATTAATTAGTAATCGATCGATCATCGATTACGAACGACTTTTAT
CGATTGACATCGATTAAATCGACAATCGATGTTATCGATTAGGTACGTCT
GGcttagagaatagctgttatatttttccaggagcatagtATTTCTAGAA
AACAGATACGCTAGATATGATGGGACTTGggagtcccattttttcccAGG
AGGAGAGCCCAGGAgcaggatacagaacagatcgctttttccaggagaaa
gggacctcaagcagtatagacctaactcttcatagaaaaattacgggaaa
cgcatatttggtggactttgtaccctatgctgcacgcaagccacttatta
agccaaagtcccgcaaaagcaggacaaaaatcagcaaaaatcagtttatT
GAAGTTTGCAataaaacgccacatagaagatctttcaaattcaatatgtg
aatagagcagtaaaaaatacaacttttctatatttccttttttttgcaaa
agttctaggaatgaaaataaaagaataaatgataattgaatggtatccac
tgatgatccgcggcaccggaaaatttttttccgtaagcAACCCAAGCCCT
GATTTAGCGGCCCAAGACCTGGGAAACTTTGCGATTTTTGAGACTAACTA
GCTTTTTTGCCGtaattttagaatttatagctaaaaagttctaaaaatcT
AGTAGAACACATGCATTAGAAGATCATCAAATTGAACTACTTTTCCATGG
GAATATAATGGTTCGTTCAtcctctttttccaaaaaagcaagTCTCAAAA
GTCGTAAAGTTTCACAGGTCTTGGGCCGGTAAcatagtgggcaccccccc
tggattctggggggggttgaggattttcagatttttaaaaataggtgggc
gttgggttgatgagaaatttcaggtgggggtaaccctatgtaggtggggg
taacatttttcaggtgggagttttctgtatttaacttcgtttgattttgt
acttttttgtctttttcaactttccacatactatactagataaaaatata
aacaaatgactGTCATAAGTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCAGGACTTTTAACTGGGATCTTTAGTGTTCCTAAAAGG
AACAAGACCTCCAAATTCGAAGGTGTGATTCGATTGCGCCGTTTTGCGCA
TATGAGTTGGAGTATGgtattttacaaatttaggtgggggttgctgaaaa
aggtgggggttgggctgatatgaaatttcaggtgggggtaaccctatgta
ggtgggggtgacctttttcaggtgggggttagaGGGGTGTTGCCCACTAT
GGGTAATTCAGGTCTTGGGCCGGTAATTAAGGTCTTGGGCCGCTAAATCA
GGGCTTGGGCCGCTTACCTGCGCACAGTTTGCGGGCGTTCACCTGCGCAC
AGTTTGCGGGCGTTCtgcgagcgttctcggctcaatcctcggaccgtaTT
AAAAATGGAAGACTcagctgtgacagatcatttcgatggaagttgttgga
atgtttacaagactcttgacagaaaatgctttgttttattgtcaatgatg
acagtgccgtttaattttgttagatctgatatattgatggttgtaagtgc
actttacaGTTTtgatgttattagatgctgttttagagctttagagctag
cctacctagccggtggctgctcttggaGGACAACCCTGCCGGTACTGTTA
ATTTACCCCACTAAGATTCTCCTGACTTTTCTGGGAGTTTTCCCAGTAGA
GGGGGTGCCCCCAGTGCACAAACGCCAAACTCtatgagattggaaagggt
tttttcTAAAGGTATAGTATATTTTGTCTAACTTTCTGAAGCTCATTTTT
CTCAACAAACCTACCTGCCTCGACACACTGGCGACTAGAGACGGACACTG
GAGTCCTATAGTCTTTTTCATTCCTCCGGTTGGCAAACAATATCCAATAT
ATATATTATCCTCCAGGGATGCATGGTCTcttattttacctttttttttg
taaattcctACCTTCTattctgattttctgactttctgagtTTCTAGCTA
GCTAGCTAACTGTATCctactgtgaagtcgggtaacttgcatcagtggag
ggaaacttgcatagctatcaaatgactgaccaatcaaggcagcaaaattt
caaaacaaatgaactacgcagctccgctcgcagctctagtctaccatttt
tgtctTGACTTAACTTTGAATCActaaccagccaggtcattcatttgagg
gctattcATGTTAgcatccactgatgcaagttaccttaTCTCACGGtatg
tatttttctgaaatttgcctgtATATACCCGGTGAAATAGGTCTCCTCCT
CAGGATCGAACAAATGCAAGCAATCTTTGATTCGCAAACCCAATGCAATG
CAAACAGCCTTATGTAAGTCCTGAATTTTAGCAAGGCTTGAAATAAAGAT
CTCAAGTGGGTCAGACAAAATAAAATGTCCGATCAGGAttgttttagctt
gaaaattatgatttttgggtcgctatttttgaagctatttgggtcggacc
ttatttcgagccctgtttTAGGGCAAAAAGTCTTGAGAAGCCTTATGTCC
AACACATTTGGTTGATGGACATAGTAGGGCATTTTAAAGcttgatttttg
cttgaaacttgCTTAGTATATATGAAGATTTTCAGTTCAATTCAATATAG
CCTTCTGTCGAGCAAGCTATTAAAACCTCTTTTTAACCACAAAAAGATAA
CTATATATAATACCCCCCATAATATCAAAAGTATGGACTCTTGACattat
ttattttcatgttaGTAGCACATAAAACCCTagtcaattatctcaaaata
aaaaatggacTTGTTTTGAATTAACACAGCAATttggaaggggggggggg
ggaaatttcagttaaaaacggctaaaaatggGATTGGTGTACTTTGTAAA
GAAttgtttcattaatttttttcaatgtttttttattacAGTTCTGATTA
GTTTTCATACCAAAATGATCATCATAGCACATGACTGCATATGACTGAAT
TTTGTACAAATTCATAGGAGTCAGTTGAAATTATGGGTGGGAAAAATAAA
CGTAGTACAGGGTGGAAATGACCCAAGTGGGAAATAGCAAGAAAAATGAA
TGTATATGTATGTTTATTATGTTGGACTgtgaaaaagaatattttgattt
attgtttatgtttatgtatGTTTATTACAGATTTGAGAGTAAGATAAGGG
AATGGTTgcaattaaagaaaattttatcaGTAAACTTACTTACAGTAAAT
TTCACaacaaattttttacattcTTTTTATAACTCATGACAGAGGAAATA
GAATCAATATGACTACAATTCCAAAGGCAAAGGtttgaattcttttttct
tatttgagaataattttaacttttttttttcatttttcataacATGCACA
TTTTTTAACTAAGCAACCCAGAGTTGCTTAGTATTATTTAGcttcatttc
aaaaaaattttatattgacCACCCCAATTTTATACCATATTCATGCTCAT
TTGGTCAAGGACTATTGCCTGTCATCTAGGCACTTATAGCatctatcaaa
acttttcctttAGGAGGTGTAGAAATATTTTGGTTGATTTCAGAGCTCGA
gccttagctctagtttagacgaccccatttttgccctgcctattctaatt
gtggattaaagttggcataaagtgggctgtctaaagtcaatgcattgccc
tcttttgatgTCAatacaatgtcttctttcaatcttttccaagcaaagat
tttaactgccaactttgtgcccactttctgattactctaacaattagaat
aggtagggcagaaagtcggccgtctaaactagagcttaggaATTTGTTTA
TAATtgtatatttttcatttgattcagtcactttaaatatttttattcaa
tgcAAATTTTCTACTCATCATTTCAGGTCAGCGATGAGATGAAAATCACT
CATGAGGACCAAAAGATGATCAATGCATTTGCCAATAAGAATGCCAAACA
CAATGAGCTCAAAAATACTGTCGAGAAGAATAAGGTACCtttaagtggat
taaattttgtgtgggttaattttcatgattttcacaaattttggctattt
ttacAATAATTATAGTCGGacttgcaaaatatttttaggcattttttgtg
aatttaacttgaaaacagtGTAGCAATTTACGCAAAATCCAACAAGATGG
AAAACTGAGTTTGAGGGACCTAATTTTTAACAAACTGAACTGGGGGTTAA
ATTCTGATTAAAGTACATTTTTTTCAACACAGTGGCTCAGTTTTGAAAAG
CCTCTAGTCTCTTCCACTGCTTTGATACTGTAATAACTGCCTGGAAAGGG
ATTTGCACCCCAACTTACAAAAGCTTGAAACCTCCTACAAACCAGTACAA
ACCTTTTTCAATAaatcttttgttatttaattttctttaatttgttGCAT
TTTTCGGTTTTTCAACTTTAAGGAGTCACTTAAAATATCCATctatttat
ctatctatctatctatctattataTTTTTAAGTATTAAAAAGGTCCTAAG
ACCCATATCCATACATGcaaattataagaaaataaaaataaaaagtatgt
AAAATTTTAGCGCTAAGACAAGGCACAAAGAAATAAATTAGCTCAAGTTG
GCTAAATAAAAGTGTAAGTTGTAATATTTTTCCAGTAGGGGCCACCTAAA
TCTAGGGGCCACCTGAATTCTTAGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGcaacctgaattcttaggg
gccacctgaattcttaggggccacctgaattcttaggggccacctgaatt
cttaggggccacctgaattcttaggggcaacctgaattcttaggggcaac
ctgaattcttaggggcaacctgaattcttaggggcaacctgaattcttag
gggccacctgaattcttaggggccacctgaattcttaggggtcacctgaa
ttcttaagGGCCACCTGAGTTCTTAGGGGCCACCTGAATTCTTAGAGGCC
ACCTGAATCCTTAGGGgccacctgaattcttaggggtcacctgaattctt
agggaccacctgatttcttagaggccacctgaattcttaggggccACCAA
GAACCTGCTTATGATTATTTGTCTgataaaatgataattttgCATGTGAA
TGACATTGTGAAGTTACATccttcttttacttttttcagaAAGCCCTTCA
GAACTTGGAAGATGCAGGAGATGAACTTATGATGTGTGATGATACTGGTA
GTGTCCCGTATCTTTTCCAATCATTCTTAATACAATGTGGTTTATTGACA
GTATTATTATATAACCATAATCATATATCTTAGTCTtgatttcaaaaaca
aattacGAAATTATTACTGTCGCGGGAGTACcttagggaagaaattttcg
cagaatttaaattcggcgaaaatttcttcccttaagcttttttcacatgt
acgtaaaattttacttaagaccttgaagggtggggaatttccctaagctt
acgtagtgttttagGGCCTGATGTAGAGattgcttacgttcaaaaagttt
tgaacggaaggaaaagtcatgtaagaccctcttaatcaacaaaaactcta
cataatgtcggggaaattcccaaaagacagccttacgaacgattttccGT
AAGGTGTAAAGTAAagttttacgtgcatgtgaaaaaagctttaaggcACG
GGATTGTTAAAAATCTCGCTAAGGGTCTAAGGTTCGTAAATTAATAAATT
CTAATTTCAAGggttacaaaaaaaataaaagtttcgtCCCTAAAAAGGCA
AATTTagggaaaaatatttctaaagcttacaaatttttatcgatttttga
CCCAAAAAATTCCGTGGTACAAGTAATCTCTTTTTATAAGAGAATATCAA
TTTTCGTCACTAGAACGCAAATAAATGAAGTTATATAGtcgtgtttttat
tttgtttggaaATGACAATTGTTAGCAGGGTACAAGGTTCGTCTCTGTTT
TCTATGAATTATTCTTTAACTCTGAAAATATGCAGTGTTCAAATTGGAGA
AGTCTTCCTTCGCATGACACCTGATGATGCCCAAGTATATATCGACCagc
aaaaagaagaaattgaaagtgaaatctCTAAATGTGACAAACAGATTGCT
AACTATACACAGGAACTGAAAAACTTGAAAGTCAAATTATACGCTAAATT
TGGTAATAACATCAACCTAGAGGAAGAAGAGGAAAGTTAGgggatttatt
aaaatttataTTCTGTTTTCATATTATGTATCTATAGACCATTTTTATTT
CTCttaaatacattttttgttaaattatgTATCCTattatttacgttttt
ttttctcttttgtttccttgcctccAGACAATTTTGATTATTCAGCAAGT
TTCGGTTGATAAAAAATCGTTCTGTCATTATTTCTCTGCCACGTCAAACT
TAAGCACGTTGGTTTCATTTTCGG

Coding sequence (CDS) from alignment at sc0000243:26086..45209+

>TCONS_00016569 ID=TCONS_00016569|Name=TCONS_00016569|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000243:26086..45209+ (Clytia hemisphaerica)
ATGACTACAATTCCAAAGGCAAAGGTCAGCGATGAGATGAAAATCACTCA
TGAGGACCAAAAGATGATCAATGCATTTGCCAATAAGAATGCCAAACACA
ATGAGCTCAAAAATACTGTCGAGAAGAATAAGaAAGCCCTTCAGAACTTG
GAAGATGCAGGAGATGAACTTATGATGTGTGATGATACTGGTAGTGTCCC
TGTTCAAATTGGAGAAGTCTTCCTTCGCATGACACCTGATGATGCCCAAG
TATATATCGACCagcaaaaagaagaaattgaaagtgaaatctCTAAATGT
GACAAACAGATTGCTAACTATACACAGGAACTGAAAAACTTGAAAGTCAA
ATTATACGCTAAATTTGGTAATAACATCAACCTAGAGGAAGAAGAGGAAA
GTTAGATGACTACAATTCCAAAGGCAAAGGTCAGCGATGAGATGAAAATC
ACTCATGAGGACCAAAAGATGATCAATGCATTTGCCAATAAGAATGCCAA
ACACAATGAGCTCAAAAATACTGTCGAGAAGAATAAGaAAGCCCTTCAGA
ACTTGGAAGATGCAGGAGATGAACTTATGATGTGTGATGATACTGGTAGT
GTCCCTGTTCAAATTGGAGAAGTCTTCCTTCGCATGACACCTGATGATGC
CCAAGTATATATCGACCagcaaaaagaagaaattgaaagtgaaatctCTA
AATGTGACAAACAGATTGCTAACTATACACAGGAACTGAAAAACTTGAAA
GTCAAATTATACGCTAAATTTGGTAATAACATCAACCTAGAGGAAGAAGA
GGAAAGTTAGATGACTACAATTCCAAAGGCAAAGGTCAGCGATGAGATGA
AAATCACTCATGAGGACCAAAAGATGATCAATGCATTTGCCAATAAGAAT
GCCAAACACAATGAGCTCAAAAATACTGTCGAGAAGAATAAGaAAGCCCT
TCAGAACTTGGAAGATGCAGGAGATGAACTTATGATGTGTGATGATACTG
GTAGTGTCCCTGTTCAAATTGGAGAAGTCTTCCTTCGCATGACACCTGAT
GATGCCCAAGTATATATCGACCagcaaaaagaagaaattgaaagtgaaat
ctCTAAATGTGACAAACAGATTGCTAACTATACACAGGAACTGAAAAACT
TGAAAGTCAAATTATACGCTAAATTTGGTAATAACATCAACCTAGAGGAA
GAAGAGGAAAGTTAGATGACTACAATTCCAAAGGCAAAGGTCAGCGATGA
GATGAAAATCACTCATGAGGACCAAAAGATGATCAATGCATTTGCCAATA
AGAATGCCAAACACAATGAGCTCAAAAATACTGTCGAGAAGAATAAGaAA
GCCCTTCAGAACTTGGAAGATGCAGGAGATGAACTTATGATGTGTGATGA
TACTGGTAGTGTCCCTGTTCAAATTGGAGAAGTCTTCCTTCGCATGACAC
CTGATGATGCCCAAGTATATATCGACCagcaaaaagaagaaattgaaagt
gaaatctCTAAATGTGACAAACAGATTGCTAACTATACACAGGAACTGAA
AAACTTGAAAGTCAAATTATACGCTAAATTTGGTAATAACATCAACCTAG
AGGAAGAAGAGGAAAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009263XLOC_009263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016569-exon-sc0000243-1491911889:26086..26138TCONS_00016569-exon-sc0000243-1491911889:26086..26138Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1510915933:26086..26138TCONS_00016569-exon-sc0000243-1510915933:26086..26138Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1575043694:26086..26138TCONS_00016569-exon-sc0000243-1575043694:26086..26138Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1491911889:41978..42017TCONS_00016569-exon-sc0000243-1491911889:41978..42017Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1510915933:41978..42017TCONS_00016569-exon-sc0000243-1510915933:41978..42017Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1575043694:41978..42017TCONS_00016569-exon-sc0000243-1575043694:41978..42017Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1491911889:42612..42719TCONS_00016569-exon-sc0000243-1491911889:42612..42719Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1510915933:42612..42719TCONS_00016569-exon-sc0000243-1510915933:42612..42719Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1575043694:42612..42719TCONS_00016569-exon-sc0000243-1575043694:42612..42719Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1491911889:43925..43992TCONS_00016569-exon-sc0000243-1491911889:43925..43992Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1510915933:43925..43992TCONS_00016569-exon-sc0000243-1510915933:43925..43992Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1575043694:43925..43992TCONS_00016569-exon-sc0000243-1575043694:43925..43992Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1491911889:44771..45209TCONS_00016569-exon-sc0000243-1491911889:44771..45209Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1510915933:44771..45209TCONS_00016569-exon-sc0000243-1510915933:44771..45209Clytia hemisphaericaexon
TCONS_00016569-exon-sc0000243-1575043694:44771..45209TCONS_00016569-exon-sc0000243-1575043694:44771..45209Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016569-proteinTCONS_00016569-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:26086..45209 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
160.559	173.059	143.787	121.924	37.6809	24.2366	74.6623	74.7523	87.9853	68.5038	72.1913	62.0101	68.2871	69.2852	75.3145	87.7593	94.1804	113.314	45.9026	44.4852	83.923	75.8755	97.8028	81.2241	82.2444	86.2687	71.0555	54.3343	69.3341	61.056
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016661PFDN4
IPR002777PFD_beta-like
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016272prefoldin complex
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0016272 prefoldin complex
molecular_function GO:0051082 unfolded protein binding
Blast
[Close]
BLAST of TCONS_00016569 vs. Swiss-Prot (Human)
Match: PFD4 (Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.085e-24
Identity = 49/119 (41.18%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:  100 DEMKITHEDQKMINAFANKNAKHNELKNTVEKNKKALQNLEDAGDELMMCDDTG-SVPVQIGEVFLRMTPDDAQVYIDQQKEEIESEISKCDKQIANYTQELKNLKVKLYAKFGNNINL 453
            +++ +T EDQ+ IN FA   ++  ELK  +E  KK LQNLEDA D++M+ DD    +P QIG+VF+  + ++ Q  +++ K+ ++ EI   + ++ +  + L +LKV+LYAKFG+NINL
Sbjct:   11 EDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINL 129
The following BLAST results are available for this feature:
BLAST of TCONS_00016569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PFD43.085e-2441.18Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 ... [more]
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