TCONS_00016684-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016684-protein
Unique NameTCONS_00016684-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016684-protein ID=TCONS_00016684-protein|Name=TCONS_00016684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp
MSKASGVGSSREKWPRRSEFLLMLFGYTVGLGNVWRFPYLCHKNGGASFL
IPYFIILAVEGMPLYYMELCLGQRLRNGSVGVWHLVSPYLDGLGFASVVI
CIMVCLYYNVILSWCLIYFVNSFKNPLPWSECPKVTITKGNQTFQKPNAE
CEKAGPTSYFWYRTTLDISEDIESGNEINWTIAFSLLFAWLVVWLCMVKR
IKSEGKVVYVTATLPLILLGAMFFRGVNLDGFQQGLALLFVPEFSRLKDP
LVWLDAATQTFYSLGIAYGSLIAFASYNPLKNDTTRDAITICLIDAGVSV
YASVVIFCFIGYRAELKMHDCLAMLGLNHTESESYEIFVGNATVNGNITE
IVCSKKEFLAELSQSTGLAFITFTDAINTLPQAQMWSILFFLMLLMLGVD
TQFGMLEGLFTPLFDANPFPKLRKEIVTGIVCLAIYLPSLIMTQHSGNYW
LQIIENYSVGIPLLVVALCEVISISYLYGIERFCNDIEYMTNKRPNKIWV
ICWKIISPALIVFVLIFSIKDLCTKSPTYQVWVAHMAEGKYVELPPWAIV
FAVLLMFSSLIMIPVVALLKYFKIIKKGSSPGRLGLSLSKKTRGRKQRNG
NDIASVHRPLQAMESNTFSMATEFSDNMFKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009323XLOC_009323Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016684TCONS_00016684Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000175Na/ntran_symport
Vocabulary: Molecular Function
TermDefinition
GO:0005328neurotransmitter:sodium symporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006836neurotransmitter transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006836 neurotransmitter transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005328 neurotransmitter:sodium symporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000175Sodium:neurotransmitter symporterPRINTSPR00176NANEUSMPORTcoord: 92..118
score: 42.56
coord: 48..67
score: 48.93
coord: 207..224
score: 43.62
coord: 289..309
score: 28.26
coord: 19..40
score: 66.77
coord: 460..480
score: 38.56
coord: 380..399
score: 54.34
coord: 500..520
score: 33.8
IPR000175Sodium:neurotransmitter symporterPFAMPF00209SNFcoord: 11..573
e-value: 2.0E-170
score: 567.8
IPR000175Sodium:neurotransmitter symporterPROSITEPS00610NA_NEUROTRAN_SYMP_1coord: 35..49
IPR000175Sodium:neurotransmitter symporterPROSITEPS50267NA_NEUROTRAN_SYMP_3coord: 10..576
score: 85.581
NoneNo IPR availableSUPERFAMILY161070SNF-likecoord: 359..572
coord: 11..320

Blast
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BLAST of TCONS_00016684-protein vs. Swiss-Prot (Human)
Match: S6A19 (Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Homo sapiens GN=SLC6A19 PE=1 SV=1)

HSP 1 Score: 470.315 bits (1209), Expect = 6.276e-159
Identity = 234/585 (40.00%), Postives = 351/585 (60.00%), Query Frame = 0 
Query:    8 GSSREKWPRRSEFLLMLFGYTVGLGNVWRFPYLCHKNGGASFLIPYFIILAVEGMPLYYMELCLGQRLRNGSVGVWHLVSPYLDGLGFASVVICIMVCLYYNVILSWCLIYFVNSFKNPLPWSECPKVTITKGNQTFQKPNAECEKAGPTSYFWYRTTLDISEDIESGNEINWTIAFSLLFAWLVVWLCMVKRIKSEGKVVYVTATLPLILLGAMFFRGVNLDGFQQGLALLFVPEFSRLKDPLVWLDAATQTFYSLGIAYGSLIAFASYNPLKNDTTRDAITICLIDAGVSVYASVVIFCFIGYRAELKMHDCLA------MLGLNHTESE-SYEIFVG-----NATVNGNITEIV---CSKKEFLAELSQSTGLAFITFTDAINTLPQAQMWSILFFLMLLMLGVDTQFGMLEGLFTPLFDANPF-PKLRKEIVTGIVCLAIYLPSLIMTQHSGNYWLQIIENYSVGIPLLVVALCEVISISYLYGIERFCNDIEYMTNKRPNKIWVICWKIISPALIVFVLIFSIKDLCTKSPTYQVWVAHMAE---GKYVELPPWAIVFAVLLMFSSLIMIPVVALLKYFK 573
             SSR KW  +++++L   G+ VGLGNVWRFPYLC  +GG +F+IP+ I+L +EG+PL Y+E  +GQRLR GS+GVW  + P L GLG AS++   MV LYYN I+SW + Y  NSF+ PLPWS+CP       NQT      EC ++ P  YFWYR TL+IS  I     I W +   L  AW V+++C ++ I++ GK VY+T+TLP ++L     RG+ L G   G+  LF P  + L  P  WLDA  Q F+S  +A+G LI+F+SYN + N+  +D++ + +I+   SVY ++V++  IG+RA  +  DC +      + G +  E   + E FV      NA+      ++V   C    FL+E  + TGLAFI FT+AI  +P + +WS+LFF+ML  LG+ + FG +EG+  PL D     PK  KE++TG++CL  +L   I T +SG YWL ++++Y+  IPLL++A CE+ S+ Y+YG++RF  DIE+M   +PN  W + W+++SP L++ + +F      ++  TY +W     E    + +  P W  V  V++     + IP  A+ K  +
Sbjct:   29 ASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSFQEPLPWSDCP----LNENQTGYV--DECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPGYEEFPKSQKISYPNWVYVVVVIVAGVPSLTIPGYAIYKLIR 607
The following BLAST results are available for this feature:
BLAST of TCONS_00016684-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S6A196.276e-15940.00Sodium-dependent neutral amino acid transporter B(... [more]
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