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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016684 ID=TCONS_00016684|Name=TCONS_00016684|organism=Clytia hemisphaerica|type=transcript|length=2873bpRun BLAST on NCBI protein sequence of TCONS_00016684-protein >TCONS_00016684-protein ID=TCONS_00016684-protein|Name=TCONS_00016684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp MSKASGVGSSREKWPRRSEFLLMLFGYTVGLGNVWRFPYLCHKNGGASFLRun BLAST on NCBI transcript from alignment at sc0000246:109861..130933- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016684 ID=TCONS_00016684|Name=TCONS_00016684|organism=Clytia hemisphaerica|type=transcript|length=21073bp|location=Sequence derived from alignment at sc0000246:109861..130933- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000246:109861..130933- >TCONS_00016684 ID=TCONS_00016684|Name=TCONS_00016684|organism=Clytia hemisphaerica|type=CDS|length=17064bp|location=Sequence derived from alignment at sc0000246:109861..130933- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016684 vs. Swiss-Prot (Human)
Match: S6A19 (Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Homo sapiens GN=SLC6A19 PE=1 SV=1) HSP 1 Score: 469.544 bits (1207), Expect = 1.166e-152 Identity = 234/585 (40.00%), Postives = 351/585 (60.00%), Query Frame = 3
Query: 240 GSSREKWPRRSEFLLMLFGYTVGLGNVWRFPYLCHKNGGASFLIPYFIILAVEGMPLYYMELCLGQRLRNGSVGVWHLVSPYLDGLGFASVVICIMVCLYYNVILSWCLIYFVNSFKNPLPWSECPKVTITKGNQTFQKPNAECEKAGPTSYFWYRTTLDISEDIESGNEINWTIAFSLLFAWLVVWLCMVKRIKSEGKVVYVTATLPLILLGAMFFRGVNLDGFQQGLALLFVPEFSRLKDPLVWLDAATQTFYSLGIAYGSLIAFASYNPLKNDTTRDAITICLIDAGVSVYASVVIFCFIGYRAELKMHDCLA------MLGLNHTESE-SYEIFVG-----NATVNGNITEIV---CSKKEFLAELSQSTGLAFITFTDAINTLPQAQMWSILFFLMLLMLGVDTQFGMLEGLFTPLFDANPF-PKLRKEIVTGIVCLAIYLPSLIMTQHSGNYWLQIIENYSVGIPLLVVALCEVISISYLYGIERFCNDIEYMTNKRPNKIWVICWKIISPALIVFVLIFSIKDLCTKSPTYQVWVAHMAE---GKYVELPPWAIVFAVLLMFSSLIMIPVVALLKYFK 1937
SSR KW +++++L G+ VGLGNVWRFPYLC +GG +F+IP+ I+L +EG+PL Y+E +GQRLR GS+GVW + P L GLG AS++ MV LYYN I+SW + Y NSF+ PLPWS+CP NQT EC ++ P YFWYR TL+IS I I W + L AW V+++C ++ I++ GK VY+T+TLP ++L RG+ L G G+ LF P + L P WLDA Q F+S +A+G LI+F+SYN + N+ +D++ + +I+ SVY ++V++ IG+RA + DC + + G + E + E FV NA+ ++V C FL+E + TGLAFI FT+AI +P + +WS+LFF+ML LG+ + FG +EG+ PL D PK KE++TG++CL +L I T +SG YWL ++++Y+ IPLL++A CE+ S+ Y+YG++RF DIE+M +PN W + W+++SP L++ + +F ++ TY +W E + + P W V V++ + IP A+ K +
Sbjct: 29 ASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSFQEPLPWSDCP----LNENQTGYV--DECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPGYEEFPKSQKISYPNWVYVVVVIVAGVPSLTIPGYAIYKLIR 607 The following BLAST results are available for this feature:
BLAST of TCONS_00016684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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