TCONS_00016696-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00016696-protein
Unique Name	TCONS_00016696-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	135

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00016696-protein ID=TCONS_00016696-protein|Name=TCONS_00016696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MSADLCWSIVRKNSCFLVKSLGKTLTKEPNNLSGVNNFASNGYINKKTVG
VDADPSGKGVVLSIRKSKNGNKPAKSISRTTVRGSRHSIKVIRDTLNKSE
YRKDLSDIAIRRASAIIRSQNTSAAKKQRSRRKKN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009327	XLOC_009327	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00016696	TCONS_00016696	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029004	L28e/Mak16

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 5..119 e-value: 7.6E-31 score: 107.1

Blast

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BLAST of TCONS_00016696-protein vs. Swiss-Prot (Human)
Match: RL28 (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.170e-33
Identity = 62/132 (46.97%), Postives = 85/132 (64.39%), Query Frame = 0

Query:    1 MSADLCWSIVRKNSCFLVKSLGKTLTKEPNNLSGVNNFASNGYINKKTVGVDADPSGKGVVLSIRKSKNGNKPAKSISRTTV-RGSRHSIKVIRDTLNKSEYRKDLSDIAIRRASAIIRSQNTSAAKKQRSR 131
            MSA L W +VR  S FL+K   +T + EPNNL   N+F  NG I++KTVGV+    GKGVV+ I++     KPA S  RTT+ + +R ++  IR  + K++YR DL   AIRRASAI+RSQ     K++R+R
Sbjct:    1 MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKRTR 132

The following BLAST results are available for this feature:

BLAST of TCONS_00016696-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00016696-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RL28	1.170e-33	46.97	60S ribosomal protein L28 OS=Homo sapiens GN=RPL28...	[more]

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TCONS_00016696-protein (polypeptide) - C. hemisphaerica