TCONS_00016842-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016842-protein
Unique NameTCONS_00016842-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016842-protein ID=TCONS_00016842-protein|Name=TCONS_00016842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MGNEEHTTSFQGKLTKTLHLGQAGAILGCGISYDDETVASCATDNKVLLW
DVNTGQCQGSLDGHASDVTRCSFGKEILATGSRDGTVILWRYADNKRCSK
ITVHSTEITSCTISPNHKYLLTTSADTHCRVWTIRGGNGEFIQGPKFIEL
FHEGEKYKFSDASFSSDSCAIVTSSTDGQVKLWDSENGQKLLDLCSDEGE
ILSARFSSDGKYLITMVKKCVKIWNIAKKKVSWSIEDAKGFQALASHSTE
NMFILIAQDGSISGYDITHKQELFKRL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009434XLOC_009434Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016842TCONS_00016842Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 171..185
score: 33.91
coord: 38..52
score: 30.51
coord: 78..92
score: 40.71
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 94..133
e-value: 4.2E-5
score: 32.9
coord: 54..91
e-value: 2.9E-6
score: 36.8
coord: 11..51
e-value: 0.0039
score: 26.4
coord: 187..225
e-value: 2.5
score: 14.4
coord: 144..184
e-value: 0.017
score: 24.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 101..132
e-value: 7.4E-5
score: 23.4
coord: 55..90
e-value: 8.4E-7
score: 29.5
coord: 162..184
e-value: 0.044
score: 14.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 101..135
score: 10.976
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 61..100
score: 11.11
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 152..193
score: 11.544
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 19..60
score: 8.804
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 230..276
e-value: 0.0045
score: 15.9
NoneNo IPR availableGENE3D2.80.10.50coord: 3..88
e-value: 2.5E-17
score: 62.2
NoneNo IPR availableGENE3D2.80.10.50coord: 147..229
e-value: 3.3E-15
score: 55.4
NoneNo IPR availableGENE3D1.10.10.670coord: 89..146
e-value: 3.7E-16
score: 58.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 38..52
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 171..185
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 19..234
score: 32.351
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 16..273

Blast
[Close]
BLAST of TCONS_00016842-protein vs. Swiss-Prot (Human)
Match: WDR5B (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.002e-18
Identity = 67/255 (26.27%), Postives = 121/255 (47.45%), Query Frame = 0 
Query:    9 SFQGKLTKTLHLGQAGAILGCGISYDDETVASCATDNKVLLWDVNTGQCQGSLDGHASDVTRCSFGKE--ILATGSRDGTVILWRYADNKRCSKITVHSTEITSCTISPNHKYLLTTSADTHCRVWTIRGGNGEFIQGPKFIELFHEGEKYKFSDASFSSDSCAIVTSSTDGQVKLWDSENGQKLLDLCSDEGE--ILSARFS-SDGKYLITMVK-KCVKIWNIAKKKVSWSIEDAKGFQ----ALASHSTENMF 253
            ++ GK  KTL+ G    I     S D   + S + D  + LWDV +G+C  +L GH++ V  C+F     ++ +GS D TV +W     K    ++ HS  +++   + +   +++ S D  CR+W    G        + ++   + +    S   FS +   I+T++ D  +KLWD   G+ L      + E   + A FS + GK++++  +   V IWN+  K++   ++  +G      + A H TEN+ 
Sbjct:   70 AYDGKYEKTLY-GHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASG--------QCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVVISAACHPTENLI 312
The following BLAST results are available for this feature:
BLAST of TCONS_00016842-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR5B3.002e-1826.27WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
back to top