TCONS_00016842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016842
Unique NameTCONS_00016842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1032

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016842 ID=TCONS_00016842|Name=TCONS_00016842|organism=Clytia hemisphaerica|type=transcript|length=1032bp
gaaaaacaatcaaaagaaatCGACCACCATGTAAATCATCCAAGAGCCAT
TCTTAAAGttCGATATTCAAGAGTCCACACATATGACGAAATTGTACCTT
GTCCGCTGCCGACAAATGATCTAATTAACAATCAACTGAATACTACATGA
AAAGTTGGAGTGCTTGACATACGTAAAAAACGATATCATCATATTGGAGT
AATGGGTAACGAAGAACACACGACGAGCTTTCAAGGGAAATTAACCAAAA
CACTTCATTTAGGACAAGCAGGTGCCATTCTTGGATGTGGAATATCCTAC
GATGACGAGACAGTCGCCAGCTGTGCCACAGATAACAAGGTCTTACTATG
GGATGTAAATACCGGACAATGTCAAGGGTCATTAGACGGACACGCTTCGG
ACGTAACGCGATGTTCGTTCGGAAAAGAGATTCTAGCTACAGGTTCTCGT
GATGGCACAGTCATCTTGTGGAGATACGCTGACAATAAAAGGTGTTCCAA
AATAACCGTCCACTCAACAGAAATCACGTCATGTACCATTTCGCCAAACC
ACAAATATTTGTTGACGACTTCAGCAGACACTCACTGTCGTGTTTGGACC
ATCAGAGGTGGAAATGGTGAATTCATACAAGGGCCAAAATTTATCGAGTT
GTTTCATGAAGGAGAGAAATATAAATTTAGTGATGCGTCATTTTCAAGTG
ATTCATGTGCCATcgtgacgtcatcaactgatgGACAAGTCAAATTGTGG
GATTCAGAAAATGGCCAAAAGCTTTTAGACTTGTGCTCAGACGAAGGTGA
AATCTTAAGTGCTCGTTTTTCATCGGATGGCAAATACTTGATTACCATGG
tcaaaaaatgtgtcaaaataTGGAATATCGCCAAGAAGAAAGTGTCGTGG
TCGATCGAAGATGCTAAGGGATTTCAGGCATTGGCATCACATTCAACAGA
GAATATGTTCATTCTGATTGCTCAAGACGGCTCCATTTCAGGATATGACA
TCACTCACAAGCAAGAACTATTCAAAAGGTTA
Run BLAST on NCBI

protein sequence of TCONS_00016842-protein

>TCONS_00016842-protein ID=TCONS_00016842-protein|Name=TCONS_00016842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MGNEEHTTSFQGKLTKTLHLGQAGAILGCGISYDDETVASCATDNKVLLW
DVNTGQCQGSLDGHASDVTRCSFGKEILATGSRDGTVILWRYADNKRCSK
ITVHSTEITSCTISPNHKYLLTTSADTHCRVWTIRGGNGEFIQGPKFIEL
FHEGEKYKFSDASFSSDSCAIVTSSTDGQVKLWDSENGQKLLDLCSDEGE
ILSARFSSDGKYLITMVKKCVKIWNIAKKKVSWSIEDAKGFQALASHSTE
NMFILIAQDGSISGYDITHKQELFKRL
Run BLAST on NCBI

transcript from alignment at sc0000253:78755..89850+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016842 ID=TCONS_00016842|Name=TCONS_00016842|organism=Clytia hemisphaerica|type=transcript|length=11096bp|location=Sequence derived from alignment at sc0000253:78755..89850+ (Clytia hemisphaerica)
gaaaaacaatcaaaagaaatCGACCACCATGTAAATCATCCAAGAGCCAT
TCTTAAAGGTACTAATCTACTCGTAGACAAATTGTACTTTATGCAAGagt
ttttttattctttagTCGTCATCCAAAACTTTAAATCTAAATCTATAAGT
CGATGAGCCAATTAGAGGTCTTTAACGACCTCATTTAATTCGCCCTTTAA
TAGTATTCCATCCAATTAAAGAATGGGTTtgtcttgattttgtttttctt
ttattagttCGATATTCAAGAGTCCACACATATGACGAAATTGTACCTTG
TCCGCTGCCGACAAATGATCTAATTAACAATCAACTGAATACTACATGAA
AAGTAAGAACCAGTTAAATTTACATAATTAGCTTTTGAAGACTTAATTGG
ACGTTCATTCATTCCTTCATTCCTTCATTTCACCTTGAACTTATGGATTT
CATCTTTGATAAGGTTTGTGAAAGTTATGAATTTTGCGTATGTAATGGGC
TTGTAGAGAGATGAACTCGGCCATTCCAGAGGAAGGGGTACGTTACGTTA
CGTAATGTCTATTTTGACTGGATACCGCCAGTAGGCACCTAGGGACGTCT
TGACTCATGTACCATTTGTTAGCACTTATAAAGGTGGTTCAATGCATAGA
CTTTCCAATCTTGGTTGAAAACTTCTTGGAATGGCCCTATTTTCtgcaat
ttttttgaagcctAGTAATTGTACGATTGCAATTCTCAATATACatgcat
gtttttttataagaacatccaaactttttaggcctttggatgttcttaac
atgttccagttctttttttattagaatatactttataagaatatttatga
tgaaattggccaaaacattaagaataaggtaaaaataccaccatcatgga
atttggcgagtgaacctaagaatgccatttttagagcattttaccgTTAA
ATTGTCATTTATTACCCAGCAATGCTAAAAGATTCaacaaaaatgcaaaa
gttttgatttaggtATGTATTACCATGCTAGATTTTGGCTGGGATTGGAT
CAGCACCTAATAATATAAGAATACGGtgagaatatttcaggatgattttc
ctcaaaaagttaagaatattcatgatgaattgaaaaacacgaaaaaagcg
tgtattttcaccattttctatgtaattctttcaattttcttaagaaattg
gctgttttcgagtccgtgaagccttaaaatgttcttaacttgctcttaat
attttggtcatcacagccttatgttcttatatagttttttcttataaata
aacgtgCACGTGATTTGATCATTTcgcaaaacaaacaaacaattagCGGT
ATTTTGACTAGAAAAACTATAATCTTGTTTCTAAACTGAAAAATTTCCTT
TTACGTTCTCATTTTCTCGCAAAATACCAATGGTATTAGTCCAAGTATAT
CCAATTTTCAAGTTAGTGAGTTAGAGTGAGGTTGTTTTAGGATTATAAAC
ACAAACCCCTTTCTCCCTTTTCAATGGCACGAGGAGTATTGGTGATACTG
GGATCAGAAAGGACTCAAAGTTGATGCTCCCAGTTCAGGCACTCGTAATA
TGTTTTCAACAATGTTTTTTTTGACACAAGATAGTTTGGTTTGAATTCTC
tttatttgagtttgaaatacATAtataacatccctgtctcagaGCCCCGA
ATTTTTTAGCAAGAGGGGATGGGGAAGATCTTGTTTCCAgtggttttttt
ttaaaaacagttagcattttcaaaatttcagtcaTAAAACTTCTGTCAAG
TTTGCCAATTTGGAAGAAGttccagggtatttttcccCTTATgacaattt
tttagaaaatttcaccGATGGGTACTTGTGGGTCCCatcgttttttataa
aatttggttgaataatataatattatcttgAAATTTACACCAATAAATTT
ATCCACTTATAACTTGAATGTCTGTCAACATTTACTGAGAAATTAATTTT
ACTGGATTATAGGAAAGAATTTTTCTGTATGATGTAGAGATACGGTGTCT
AAGTGAATAATTTATAAAGTAACTGTGTGTTAATACGAAATTCTACGGGG
AAAAGTAGCTATTTAACTAAAAAAGACACACCCTGTATATCTCAATTATT
AAGGTCTACTTTGAAAGTTTTACAATAAGATTGTATTGCCACACCCTTAA
GTTAAGATCTCATTATTTCAGGCCAGTGATTTTCTTCATAATCAATTATT
GTGTAAATTTAGGaacgaaataaaatatttgtaagCTCTTATTCAGAAAT
TTGGTTGAGAAGAAGACGAATGTAATGGTgggttttattagtttttatat
GGCTATCTACTTAAACTGCATAACTCAAAAATAACTTGTTGCGATAGTGC
AAATCGACTTAAGACTTTTTTCTGAGTCGCGATATTGCCTCGGTTTTAAC
AAGGTTCTTTTGTCTCTGTTGCCCGAGATCTTACCtattttctttacttt
aatTTTGGAATACACTAAATTTTTTATGTGAACCAGAATCAGAACCATTT
GTTAATGAGGCTTGGCCCTTCTTATTTTATTGGTACTTTGAGCTTAAAAT
TATGTTTATCCTCTTGTTATTCTTGGGTAAAAACTGAGTTTTGCTTGGTT
TAATACGTCCAATTTTCACTAATTTAGCCCTTGATTTGTTTAAAATTCAG
TCTTTCCAGTCATTtttcttgaattgttcttatcgttcatttggcatttt
tgagcctcgtcgTTCTTATGTAATGTCTttataaaaaagtatacaactag
CCCGAGTATCTGGATCAACTTGAGGAAAAGGGAAGTATATTATTAGTTTC
GAAAAAAAGGTTGAGAAAAAAACCAGTTgggattctcaaaatttttattc
tttcctaGTGTTCGGATGAGAGTTGAGTGTAGTTTTTCATCGGAGGGTGA
GATTTAAGGTTTTTCATCGGAGGGTAAGTAAGATTTAAGGTTTTTCATCG
GAGGGTGAGATTTAAGGTTTTTCATCGGAGGGTAAGATTTAAGGTTTTTC
ATCGGAGGGTGAGATTTAAGGTTTTTCATCGGAGGGTGAGATTTAAGGTT
TTTCATCGGAGGGTAAGATTTAAGGTTTTTCATCGGAGGGTAAGATTTAA
GGTCTTTCTTCTCACCGGCACCGATTTGGAGGGGTGTCACTGGTCAATCA
GTCATAAGTATTTTTATGTAAATGTTGGTCATCTTTAGGCTAAtccacat
ttttttctttttacatctCTCCTGCGACTTTGTCCAAAACATTGTAGTAA
AATTTACTTAGTTTTCTATTATGCGAGAGGTCTAAAAGCAAGCCCAGTTA
GATTTATAGAATTCCATATTAAGAAGACGTTGATCTATTTTATAGACGCT
AATCTACAGACTTAAGACTCAtagaaaaaaactgacttttcaattttttt
tttctcctaaaGGGTGTCATTTCAAGAGAATGACCGTTCAAAGTTTGGGT
CCTTATACATTGGCCACCATATGAGTCAATCGGCCTGAAAATATTGAACA
AGAAGTCACCGTTCTGAGAGAATTCTGCTAGAGACCACCTAGTGAAAAAT
CAGGTAGTTATACCAATCATAATTATATATGAGCAACGCTAAAACTCGAA
AATTCAGACTAGCAAGGCCAAAATttcactggttcttataaaaaaacagt
tAAAGGAAAGTTTGTTCACAAGTCTGCTTATCCCTACTAATGTATCTCAC
TTCAAAAAAGAAGGGTTCAATTcaataaagcaaaaaatattggATGTAAA
GAGAGTTCTCTATGACGGAGAGTGTTTGATGTTCACCCATAGTCCTTTTA
TGGCAGTCGACACCCTCCATCTCAAAAATGTTGAATTCTTTTTTACTCAA
AACCTGAGTTATAATTTGATGTTTATAAACTCGAAATCTTCAcataaaat
atagaaatataaaAAGAATAGAAAGGGagaagtaaaaatatttttgccgt
gACGCGGATATTTCGCTGATCAAAGAGAAAGCCTTGTTCGATTTTTAAGC
CTTGTGATAGTGACTagttattttaaatttggtgACCTTAGTGTACGGTT
GATACAAGTTTAGGATTGGTGAGTCTTCTCTATACTTCGAAAGTTTGGGA
ATATTCAAATCATAGAGAATTCGATTTATGGAGGGCCATTTAAAGAACTT
TGGTAACTGGATGAAGAGGTGTTATCAACAATGAGAGATTCTTTACATTA
TTAAGATTGAAGTTCTGACTTTACAAGTCCATCCGATAGATTTCCGTTGC
TTTGGAATACGAAATTAACTGCCTTGTCTGTATTACAAGGGTTATATCAT
GCCACTATACTTAGGAATAACACAAAAAGGCCGATACTCAAACTTATTTT
AGCCAAAATGAAAAGAACATAAGTTTTTACTTGTAAATTGTACTCCTTGT
TAAGAATGAGTTTTTGGTACTAAAAGTTTCATGCTGTCCGATATTTAAGT
ACCAAAAAACTGCATCATTCTCCATAACGTAAAAAGCTCTGAGATATCAC
GGAGCACATTTGACACCTAGCCTGGGTATCCAGACTCAAAATTTCAGAAA
AAAACACCCTTACGTCAATATACAAAGTTTCTAAAATTTTAGAGTCTGGT
GCAACTAAAAAAATTGAGTACAGTTTGTTTGATACTGCCTGTGAGTGAAC
CCTTGTTGACAGACAATCAAGACTTTGTAAACCCAGGCAGACACACATAA
TTAACTTACTATAAAACCTCTTTTACAAACTCAAAAAACTTTCAAAACTA
CTTTAAGCTACATCAAAACATCAGGCACATTTGTAAGGGCTCCTTTCCAG
CGGCCATTTTGTTTAGAAATGAACCTGCGTTTTCATTTTCATTTGTTTAT
CTTTTTTTGCCACGTCAGCTTTTTCCATAAATTATGCCCGCGCATCGAAA
AATATCACAAACCCCGCGAAAATTCTGCTCAGTGACTGGGCGTGTACTGA
CCAATTAGAGACACTGGCATATGCAGGGACAGATATCCTTGCAGACGAGT
TACTTGGACCAGACCGTAAACCAGAGACAAAATATTAAAAAAAAAACTAG
ACGGTGAAATAGTTTACGGTCTGGATATCCAGGCTAATTTAAAACCAAGA
AGAACTAGATTTGTTATGAATCTTACTCTATATTGTGCATTTTCTTTATA
GGTTGGAGTGCTTGACATACGTAAAAAACGATATCATCATATTGGAGTAA
TGGGTAACGAAGAACACACGACGAGCTTTCAAGGGAAATTAACCAAAACA
CTTCATTTAGGACAAGCAGGTGCCATTCTTGGATGTGGAATATCCTACGA
TGACGAGACAGTCGCCAGCTGTGCCACAGATAACAAGGTATGGTACTTCT
GATTTCACTGGATTTAAATTTGAGATCTAAATTAATGCAATTTTAACCGG
GGTAAGACAATGAATTTCCAAGTTTTGACCGGGGGTACTGAATTTCAATA
ATTTTGACCGGGGGTACAGAATTTCAATACTTTTGACCGGGTTACTGATT
ATCCCAACGAGGGTTGATATTAGACCCCTTTTGGGAATCATTTTCACCGA
GCTATCCACCGGGCGGATTTCGCCGGGTCACTGATACAGATGTTTGTGAT
TGTCAACTAACGGATATAGAGCTACAAGCTGCCTGAAAGTGGCCTGTCCA
AAAAAAGCAAATCTGTCCCTTAATAGATAGTTTTGACAACGAATTTTGGT
CGATTTTAAGCCACATTTCGATTAAAGATTTTGAGAACAATTAaagattg
aaagttttttatttctatGACATTTAAATGGGAATAAGGTATACACCATT
ACCACTAACACATACCATGTTTCACTCCCAGGGGTTGAACCAAGTTGGAT
TTTTGTCGCATCATTGACAATGACAAACTGATTTTGCGAGCGGGACAGTT
TATAACGAGTTTGTGAATGTGTGTTTTTTCTACGACGGAGACGGCTAGCA
TCTCATTTGTCTAAatcctgatcaactgaggacgacgatAAACAAACACT
TTTACTGTCCTTGATTTCGCGGGTCAAAGCTGCAgtttattccaaatcgc
ttcatcaCTCTGCCCTCCTCCAAAGCGCAAATATTCAAAAACTCTCTTGT
AATATGATCTATAAGTCGAAAGGAAATTTTAAATACTGTCTCTCTTTTCT
CCTACAGGTCTTACTATGGGATGTAAATACCGGACAATGTCAAGGGTCAT
TAGACGGACACGCTTCGGACGTAACGCGATGTTCGTTCGGAAAAGAGATT
CTAGCTACAGGTTCTCGTGATGGCACAGTCATCTTGTGGAGATACGCTGA
CAATAAAAGGTGTTCCAAAATAAGTAAGTTTAACCAGGCCAGCCAAAATC
TtggattggagtttttttgaagtggTAACCCTAATGGTTGCACTACTCAA
TAGTTCGGTTCTCTACccgtttcaaattttgtttcactttttagttacat
tttttagtttttgttgatttacaCCAGCCTGTTTCTACTTAGTTGAAGAA
TATAGAAGCGCGCAAAAGTatccttttttttttgagaaaaactcgAAGTT
TGTTTTTAGTTAAGTTGTCAGTAATTATGATAGTTTTAGAACTTTAAGCC
TCTCGTGTTATGAGAAGGCGTCAAAACTGTCACTTTTTGTTCCATTCAAT
ACGTGACTTTTTAGAAAAGGTTGCTTGGTCATATTTCTAACTCAACTTTA
CTTTCTGATGATGCCGAATCCATTGGAAATATAAATATACACAGGATTCG
CTATTTCAAAAcactttcactttgaaaatttctacGAAATCTTGTATAGG
GTTTTTTCTATCAAATACCCAACCTAATAATAGTATTTTCTGACCTTTAA
AACCATTCTAATAGTTTATATTCAAGGCCTGTATTGGACGAACAGCCGAC
CCTCGGCTAAAATTGACTGGACCTCGCAAAATAGCGTGCATCCGACCCTC
AGCTAAAATTGACTAGTACTCAAATAATAGCGTATATTTGGTCGGCTAAA
TCGCTTGACTCATTAATTGCAAAGATTGCCTGGTTCTGCTTTTACCGTGA
AATAAAAGGAGTCACTCACTTTCTTCGATTTCAAAAACGGCTGTACGTTA
TCTCTGTATCTCTGTCGAATTTCTGCCCTATCCATTCTAATTGTAACAAT
AGGTAAAAAGTTGGTAGttaaaattttgcttgaaaatgattgaaaaagtc
aTTAACTTTAGACAACCAGCTTTCTGTCTACTTTCATTGACAACCAGGGG
AAAGTGGGCCTCAAAACCACGAGCTAATATAGCAAGGGGAACTTTTACCC
AAAGAATAGAATGAAGCATATTAACCAGTGTTTTTTGTCTTTTCCAGCCG
TCCACTCAACAGAAATCACGTCATGTACCATTTCGCCAAACCACAAATAT
TTGTTGACGACTTCAGCAGACACTCACTGTCGTGTTTGGACCATCAGAGG
TGGAAATGGTGAATTCATACAAGGTACATGTTCTGTTATAAGAAATTAAA
GcttcaaattatcaaaatgttaagaataagttaagaacatttcaagccTT
TGCTAACTCTGAAACACCCGATATTGTAGGAAATTTCACATAAAAATACT
TATTGTGGgaacatctttaggcttaaaattcagaAGGTTATGAAAATCTG
AAgacaaaaattcttttgaaaaaaaagaattttggatgttcttataaatg
gTTTGAGGAATTTTCACCAACACACTGAGAATAATTTGATTGGGTTTACA
TACTTTCTTTATGAGCACAATTAGCAAAAACCAAAGGGATAGAAAACCAC
TTTGTTTAGTTGCAAGTTTAGCTACTGTGATCGGAGGCGACCCTCTAACA
GAAGGGCGCCCACTCTTTCTCCTGGATTGATCCACTTACCCTAGATGCTT
CTCTTAATTACTGAGTTTCAAGCTTAGAGCGACATCAAGTACGTCTTTgg
agtctttggtatgacccgtcCAAGAGATATAACCAACGACCTACTATACT
GTTCTTTTTGAAATAACCGGTTTCCTTCAATATTTTTCAGGGCCAAAATT
TATCGAGTTGTTTCATGAAGGAGAGAAATATAAATTTAGTGATGCGTCAT
TTTCAAGTGATTCATGTGCCATcgtgacgtcatcaactgatgGACAAGTC
AAATTGTGGGATTCAGAAAATGGTAAGGTATTTCAATATAAAGTCccaat
aactcgaacacgcacggagaACGCAAGTTTgttcaagtttttgaaatttc
gagttatatagaacctagtttataaggcactgttaactgaagggaccagg
aAACTTTTTCCAGTTGAAACATTCAATTGATACAGTTTCGAGTTACTGCA
CTGTGCGTCTCTATGCTGACAATGAATAGAAAACAGAATAATTTTTCTAA
ACTTGTGGCTCACGTTGCTCGGAAAGAGGAGTAAattgttctttattttg
tttaaaaatgcggTGTAAACAAATTGTAAGAAATAAGTTAATGATGATTC
TCTTTAAACTCCTATTCCATGGCATATATAGTTTTAAAATCTTCTTAACA
ATTGTTTTTCAtataataatttttcaaaaattttctcattgaTAGGCCAA
AAGCTTTTAGACTTGTGCTCAGACGAAGGTGAAATCTTAAGTGCTCGTTT
TTCATCGGATGGCAAATACTTGATTACCATGGtcaaaaaatgtgtcaaaa
taTGGAATATCGCCAAGAAGAAAGTGTCGTGGTCGATCGAAGATGCTAAG
GGATTTCAGGTATGACTTGTAatgattgaaaagataatcggATGGTATGA
GATCTTTGGACTTTTTATTCTTTCTATGGTCCTCTGGATATCCTTCTTGC
CTGACTATTTTTTTAAGTTGAGATATTCAAATACCAATTTCAGATTTTCA
GcaagaaaataatataattcCAACTTGAAAACTGTTTTAAAGAACCCATT
TTgagagatttcaaatttttggacctacctccgggtgccccggtggaggt
cctatgaattaacctctgtctgttcgtccgttcgttcgttcgttcgttcg
ttcgttcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNccctctccccccatcaacaatca
atgatgaatttattgtgttgtgtattttcgctaaacgctatattttctga
ctgatttttttcatttttcttttcgtattgctatctaacttgaatcatca
ggtaggtccattcagcatattgcttgtttATAACTCAAAGTTCTCTCATC
TCCGACTGCTTAGACGTTACAGTTTCGCTCCGGTACGGTTTTTCGTTACG
GAACTTTTTGAGGTAAGAAAACGGAGCaattccgttccgatgaaagtAGG
GGGGGGGACAAGTTTCGCATAATGACGTCTCTTTCCGAAGTTTTTTGTCG
ACACGGTTTTCGTTTTGGAACGATGTAGAATCATATGTATGAGCATGATC
TTAACGAGCTTCAAATATATATTTGATGCTCTCTCTAAGTCGATTCGGGA
ATTGGATTTCCATCGAATGCAGGAGCATATCGAATAATAGGACGTCGAAT
AAGAGATCTGTTATTTTTACTAACGGTGTTTTCTTGGTGTTTGCTATTAA
AAACTTCATTATTATCAtggtttttatctttttttttcgagGCATTGGCA
TCACATTCAACAGAGAATATGTTCATTCTGATTGCTCAAGACGGCTCCAT
TTCAGGATATGACATCACTCACAAGCAAGAACTATTCAAAAGGTTA

Coding sequence (CDS) from alignment at sc0000253:78755..89850+

>TCONS_00016842 ID=TCONS_00016842|Name=TCONS_00016842|organism=Clytia hemisphaerica|type=CDS|length=4986bp|location=Sequence derived from alignment at sc0000253:78755..89850+ (Clytia hemisphaerica)
ATGGGTAACGAAGAACACACGACGAGCTTTCAAGGGAAATTAACCAAAAC
ACTTCATTTAGGACAAGCAGGTGCCATTCTTGGATGTGGAATATCCTACG
ATGACGAGACAGTCGCCAGCTGTGCCACAGATAACAAGGTCTTACTATGG
GATGTAAATACCGGACAATGTCAAGGGTCATTAGACGGACACGCTTCGGA
CGTAACGCGATGTTCGTTCGGAAAAGAGATTCTAGCTACAGGTTCTCGTG
ATGGCACAGTCATCTTGTGGAGATACGCTGACAATAAAAGGTGTTCCAAA
ATAACCGTCCACTCAACAGAAATCACGTCATGTACCATTTCGCCAAACCA
CAAATATTTGTTGACGACTTCAGCAGACACTCACTGTCGTGTTTGGACCA
TCAGAGGTGGAAATGGTGAATTCATACAAGGGCCAAAATTTATCGAGTTG
TTTCATGAAGGAGAGAAATATAAATTTAGTGATGCGTCATTTTCAAGTGA
TTCATGTGCCATcgtgacgtcatcaactgatgGACAAGTCAAATTGTGGG
ATTCAGAAAATGGCCAAAAGCTTTTAGACTTGTGCTCAGACGAAGGTGAA
ATCTTAAGTGCTCGTTTTTCATCGGATGGCAAATACTTGATTACCATGGt
caaaaaatgtgtcaaaataTGGAATATCGCCAAGAAGAAAGTGTCGTGGT
CGATCGAAGATGCTAAGGGATTTCAGGCATTGGCATCACATTCAACAGAG
AATATGTTCATTCTGATTGCTCAAGACGGCTCCATTTCAGGATATGACAT
CACTCACAAGCAAGAACTATTCAAAAGGTTAATGGGTAACGAAGAACACA
CGACGAGCTTTCAAGGGAAATTAACCAAAACACTTCATTTAGGACAAGCA
GGTGCCATTCTTGGATGTGGAATATCCTACGATGACGAGACAGTCGCCAG
CTGTGCCACAGATAACAAGGTCTTACTATGGGATGTAAATACCGGACAAT
GTCAAGGGTCATTAGACGGACACGCTTCGGACGTAACGCGATGTTCGTTC
GGAAAAGAGATTCTAGCTACAGGTTCTCGTGATGGCACAGTCATCTTGTG
GAGATACGCTGACAATAAAAGGTGTTCCAAAATAACCGTCCACTCAACAG
AAATCACGTCATGTACCATTTCGCCAAACCACAAATATTTGTTGACGACT
TCAGCAGACACTCACTGTCGTGTTTGGACCATCAGAGGTGGAAATGGTGA
ATTCATACAAGGGCCAAAATTTATCGAGTTGTTTCATGAAGGAGAGAAAT
ATAAATTTAGTGATGCGTCATTTTCAAGTGATTCATGTGCCATcgtgacg
tcatcaactgatgGACAAGTCAAATTGTGGGATTCAGAAAATGGCCAAAA
GCTTTTAGACTTGTGCTCAGACGAAGGTGAAATCTTAAGTGCTCGTTTTT
CATCGGATGGCAAATACTTGATTACCATGGtcaaaaaatgtgtcaaaata
TGGAATATCGCCAAGAAGAAAGTGTCGTGGTCGATCGAAGATGCTAAGGG
ATTTCAGGCATTGGCATCACATTCAACAGAGAATATGTTCATTCTGATTG
CTCAAGACGGCTCCATTTCAGGATATGACATCACTCACAAGCAAGAACTA
TTCAAAAGGTTAATGGGTAACGAAGAACACACGACGAGCTTTCAAGGGAA
ATTAACCAAAACACTTCATTTAGGACAAGCAGGTGCCATTCTTGGATGTG
GAATATCCTACGATGACGAGACAGTCGCCAGCTGTGCCACAGATAACAAG
GTCTTACTATGGGATGTAAATACCGGACAATGTCAAGGGTCATTAGACGG
ACACGCTTCGGACGTAACGCGATGTTCGTTCGGAAAAGAGATTCTAGCTA
CAGGTTCTCGTGATGGCACAGTCATCTTGTGGAGATACGCTGACAATAAA
AGGTGTTCCAAAATAACCGTCCACTCAACAGAAATCACGTCATGTACCAT
TTCGCCAAACCACAAATATTTGTTGACGACTTCAGCAGACACTCACTGTC
GTGTTTGGACCATCAGAGGTGGAAATGGTGAATTCATACAAGGGCCAAAA
TTTATCGAGTTGTTTCATGAAGGAGAGAAATATAAATTTAGTGATGCGTC
ATTTTCAAGTGATTCATGTGCCATcgtgacgtcatcaactgatgGACAAG
TCAAATTGTGGGATTCAGAAAATGGCCAAAAGCTTTTAGACTTGTGCTCA
GACGAAGGTGAAATCTTAAGTGCTCGTTTTTCATCGGATGGCAAATACTT
GATTACCATGGtcaaaaaatgtgtcaaaataTGGAATATCGCCAAGAAGA
AAGTGTCGTGGTCGATCGAAGATGCTAAGGGATTTCAGGCATTGGCATCA
CATTCAACAGAGAATATGTTCATTCTGATTGCTCAAGACGGCTCCATTTC
AGGATATGACATCACTCACAAGCAAGAACTATTCAAAAGGTTAATGGGTA
ACGAAGAACACACGACGAGCTTTCAAGGGAAATTAACCAAAACACTTCAT
TTAGGACAAGCAGGTGCCATTCTTGGATGTGGAATATCCTACGATGACGA
GACAGTCGCCAGCTGTGCCACAGATAACAAGGTCTTACTATGGGATGTAA
ATACCGGACAATGTCAAGGGTCATTAGACGGACACGCTTCGGACGTAACG
CGATGTTCGTTCGGAAAAGAGATTCTAGCTACAGGTTCTCGTGATGGCAC
AGTCATCTTGTGGAGATACGCTGACAATAAAAGGTGTTCCAAAATAACCG
TCCACTCAACAGAAATCACGTCATGTACCATTTCGCCAAACCACAAATAT
TTGTTGACGACTTCAGCAGACACTCACTGTCGTGTTTGGACCATCAGAGG
TGGAAATGGTGAATTCATACAAGGGCCAAAATTTATCGAGTTGTTTCATG
AAGGAGAGAAATATAAATTTAGTGATGCGTCATTTTCAAGTGATTCATGT
GCCATcgtgacgtcatcaactgatgGACAAGTCAAATTGTGGGATTCAGA
AAATGGCCAAAAGCTTTTAGACTTGTGCTCAGACGAAGGTGAAATCTTAA
GTGCTCGTTTTTCATCGGATGGCAAATACTTGATTACCATGGtcaaaaaa
tgtgtcaaaataTGGAATATCGCCAAGAAGAAAGTGTCGTGGTCGATCGA
AGATGCTAAGGGATTTCAGGCATTGGCATCACATTCAACAGAGAATATGT
TCATTCTGATTGCTCAAGACGGCTCCATTTCAGGATATGACATCACTCAC
AAGCAAGAACTATTCAAAAGGTTAATGGGTAACGAAGAACACACGACGAG
CTTTCAAGGGAAATTAACCAAAACACTTCATTTAGGACAAGCAGGTGCCA
TTCTTGGATGTGGAATATCCTACGATGACGAGACAGTCGCCAGCTGTGCC
ACAGATAACAAGGTCTTACTATGGGATGTAAATACCGGACAATGTCAAGG
GTCATTAGACGGACACGCTTCGGACGTAACGCGATGTTCGTTCGGAAAAG
AGATTCTAGCTACAGGTTCTCGTGATGGCACAGTCATCTTGTGGAGATAC
GCTGACAATAAAAGGTGTTCCAAAATAACCGTCCACTCAACAGAAATCAC
GTCATGTACCATTTCGCCAAACCACAAATATTTGTTGACGACTTCAGCAG
ACACTCACTGTCGTGTTTGGACCATCAGAGGTGGAAATGGTGAATTCATA
CAAGGGCCAAAATTTATCGAGTTGTTTCATGAAGGAGAGAAATATAAATT
TAGTGATGCGTCATTTTCAAGTGATTCATGTGCCATcgtgacgtcatcaa
ctgatgGACAAGTCAAATTGTGGGATTCAGAAAATGGCCAAAAGCTTTTA
GACTTGTGCTCAGACGAAGGTGAAATCTTAAGTGCTCGTTTTTCATCGGA
TGGCAAATACTTGATTACCATGGtcaaaaaatgtgtcaaaataTGGAATA
TCGCCAAGAAGAAAGTGTCGTGGTCGATCGAAGATGCTAAGGGATTTCAG
GCATTGGCATCACATTCAACAGAGAATATGTTCATTCTGATTGCTCAAGA
CGGCTCCATTTCAGGATATGACATCACTCACAAGCAAGAACTATTCAAAA
GGTTAATGGGTAACGAAGAACACACGACGAGCTTTCAAGGGAAATTAACC
AAAACACTTCATTTAGGACAAGCAGGTGCCATTCTTGGATGTGGAATATC
CTACGATGACGAGACAGTCGCCAGCTGTGCCACAGATAACAAGGTCTTAC
TATGGGATGTAAATACCGGACAATGTCAAGGGTCATTAGACGGACACGCT
TCGGACGTAACGCGATGTTCGTTCGGAAAAGAGATTCTAGCTACAGGTTC
TCGTGATGGCACAGTCATCTTGTGGAGATACGCTGACAATAAAAGGTGTT
CCAAAATAACCGTCCACTCAACAGAAATCACGTCATGTACCATTTCGCCA
AACCACAAATATTTGTTGACGACTTCAGCAGACACTCACTGTCGTGTTTG
GACCATCAGAGGTGGAAATGGTGAATTCATACAAGGGCCAAAATTTATCG
AGTTGTTTCATGAAGGAGAGAAATATAAATTTAGTGATGCGTCATTTTCA
AGTGATTCATGTGCCATcgtgacgtcatcaactgatgGACAAGTCAAATT
GTGGGATTCAGAAAATGGCCAAAAGCTTTTAGACTTGTGCTCAGACGAAG
GTGAAATCTTAAGTGCTCGTTTTTCATCGGATGGCAAATACTTGATTACC
ATGGtcaaaaaatgtgtcaaaataTGGAATATCGCCAAGAAGAAAGTGTC
GTGGTCGATCGAAGATGCTAAGGGATTTCAGGCATTGGCATCACATTCAA
CAGAGAATATGTTCATTCTGATTGCTCAAGACGGCTCCATTTCAGGATAT
GACATCACTCACAAGCAAGAACTATTCAAAAGGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009434XLOC_009434Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016842-proteinTCONS_00016842-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016842-exon-sc0000253-1491911889:78755..78812TCONS_00016842-exon-sc0000253-1491911889:78755..78812Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:78755..78812TCONS_00016842-exon-sc0000253-1510915933:78755..78812Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:78755..78812TCONS_00016842-exon-sc0000253-1575043694:78755..78812Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1491911889:79012..79106TCONS_00016842-exon-sc0000253-1491911889:79012..79106Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:79012..79106TCONS_00016842-exon-sc0000253-1510915933:79012..79106Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:79012..79106TCONS_00016842-exon-sc0000253-1575043694:79012..79106Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1491911889:83956..84141TCONS_00016842-exon-sc0000253-1491911889:83956..84141Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:83956..84141TCONS_00016842-exon-sc0000253-1510915933:83956..84141Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:83956..84141TCONS_00016842-exon-sc0000253-1575043694:83956..84141Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1491911889:84962..85127TCONS_00016842-exon-sc0000253-1491911889:84962..85127Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:84962..85127TCONS_00016842-exon-sc0000253-1510915933:84962..85127Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:84962..85127TCONS_00016842-exon-sc0000253-1575043694:84962..85127Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1491911889:86152..86277TCONS_00016842-exon-sc0000253-1491911889:86152..86277Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:86152..86277TCONS_00016842-exon-sc0000253-1510915933:86152..86277Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:86152..86277TCONS_00016842-exon-sc0000253-1575043694:86152..86277Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1491911889:86845..86976TCONS_00016842-exon-sc0000253-1491911889:86845..86976Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:86845..86976TCONS_00016842-exon-sc0000253-1510915933:86845..86976Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:86845..86976TCONS_00016842-exon-sc0000253-1575043694:86845..86976Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1491911889:87400..87563TCONS_00016842-exon-sc0000253-1491911889:87400..87563Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:87400..87563TCONS_00016842-exon-sc0000253-1510915933:87400..87563Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:87400..87563TCONS_00016842-exon-sc0000253-1575043694:87400..87563Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1491911889:89746..89850TCONS_00016842-exon-sc0000253-1491911889:89746..89850Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1510915933:89746..89850TCONS_00016842-exon-sc0000253-1510915933:89746..89850Clytia hemisphaericaexon
TCONS_00016842-exon-sc0000253-1575043694:89746..89850TCONS_00016842-exon-sc0000253-1575043694:89746..89850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:78755..89850 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.96733	1.43612	0	0.613962	0.44273	0.390849	7.82418	4.46075	0	2.58092e-09	0.347664	1.5072e-07	8.30117	12.4628	0.316289	0	0	0	0	0.849856	0.613664	1.28191	0	0.687995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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