TCONS_00016956-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016956-protein
Unique NameTCONS_00016956-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016956-protein ID=TCONS_00016956-protein|Name=TCONS_00016956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp
MDARPVGLACVDDYDGDKVPDADDHCPFNSNLHMLTFKENQQVDLAKDDV
SQADQPKARWRVNSNGRDVEQLQATNRPSLLLGKQSYSDVEYSGVLHVNT
DVGDDYAGVVFGYQNNKRFYVMMWRNENKNYGNTSYLAGTRGIQIKRVNS
NGGELGSALWFSSDTWNKVDLLWQDPRMEGWKHRESYIFKIQFQASLSRM
RFKLQKGEEVISDSGYIHDELITGGRLGVYTHGQGDVIFSRLTAKCIPRS
NMALSLNGNDSYVILPDLQQLQIEFSLMVKFWIKLPANYERTKQPIICTQ
GSSLCIYLNDRKMRVDLSGKTVVGGEVAGDSWQHFTIRYDGQGDCKLPTE
CNPEKQLTIFQNNIKTKTETIGSVAYNYKEELYIGTDKQNYMKGFIDELS
FWWVTEEDSRVTAATKMAALSWPLHQHLVTAYYNMNQLSNANNXINTSSL
HITI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009494XLOC_009494Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016956TCONS_00016956Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008859Thrombospondin_C
IPR013320ConA-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0005576 extracellular region
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008859Thrombospondin, C-terminalPFAMPF05735TSP_Ccoord: 57..246
e-value: 1.6E-59
score: 201.1
IPR008859Thrombospondin, C-terminalPROSITEPS51236TSP_CTERcoord: 38..251
score: 47.94
NoneNo IPR availableGENE3D2.60.120.200coord: 249..451
e-value: 2.0E-17
score: 63.2
NoneNo IPR availablePFAMPF13385Laminin_G_3coord: 257..402
e-value: 3.0E-9
score: 37.1
NoneNo IPR availableGENE3D2.60.120.200coord: 39..248
e-value: 3.3E-48
score: 163.8
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 210..404
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 40..246

Blast
[Close]
BLAST of TCONS_00016956-protein vs. Swiss-Prot (Human)
Match: COMP (Cartilage oligomeric matrix protein OS=Homo sapiens GN=COMP PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 9.380e-46
Identity = 92/246 (37.40%), Postives = 144/246 (58.54%), Query Frame = 0 
Query:    6 VGLACVDDYDGDKVPDADDHCPFNSNLHMLTFKENQQVDLAKDDVSQADQPKARWRVNSNGRDVEQLQATNRPSLLLGKQSYSDVEYSGVLHVNTDVGDDYAGVVFGYQNNKRFYVMMWRNENKNY--GNTSYLAGTRGIQIKRVNSNGG---ELGSALWFSSDTWNKVDLLWQDPRMEGWKHRESYIFKIQFQASLSRMRFKLQKGEEVISDSGYIHDELITGGRLGVYTHGQGDVIFSRLTAKC 246
            VG  C DD+D DKV D  D CP N+ + +  F+  Q V L  +  +Q D     W V + GR++ Q   ++ P L +G  +++ V++ G  HVNT   DDYAG +FGYQ++  FYV+MW+   + Y   N        GIQ+K V S+ G   +L +ALW + DT ++V LLW+DPR  GWK ++SY + +Q +  +  +R +  +G E+++DS  + D  + GGRLGV+   Q ++I++ L  +C
Sbjct:  500 VGDVCQDDFDADKVVDKIDVCPENAEVTLTDFRAFQTVVLDPEGDAQID---PNWVVLNQGREIVQTMNSD-PGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMWKQMEQTYWQANPFRAVAEPGIQLKAVKSSTGPGEQLRNALWHTGDTESQVRLLWKDPRNVGWKDKKSYRWFLQHRPQVGYIRVRFYEGPELVADSNVVLDTTMRGGRLGVFCFSQENIIWANLRYRC 741
The following BLAST results are available for this feature:
BLAST of TCONS_00016956-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COMP9.380e-4637.40Cartilage oligomeric matrix protein OS=Homo sapien... [more]
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