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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016956 ID=TCONS_00016956|Name=TCONS_00016956|organism=Clytia hemisphaerica|type=transcript|length=1868bpRun BLAST on NCBI protein sequence of TCONS_00016956-protein >TCONS_00016956-protein ID=TCONS_00016956-protein|Name=TCONS_00016956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=454bp MDARPVGLACVDDYDGDKVPDADDHCPFNSNLHMLTFKENQQVDLAKDDVRun BLAST on NCBI transcript from alignment at sc0000255:185549..202337+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016956 ID=TCONS_00016956|Name=TCONS_00016956|organism=Clytia hemisphaerica|type=transcript|length=16789bp|location=Sequence derived from alignment at sc0000255:185549..202337+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000255:185549..202337+ >TCONS_00016956 ID=TCONS_00016956|Name=TCONS_00016956|organism=Clytia hemisphaerica|type=CDS|length=17745bp|location=Sequence derived from alignment at sc0000255:185549..202337+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016956 vs. Swiss-Prot (Human)
Match: TSP1 (Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 3.660e-53 Identity = 126/344 (36.63%), Postives = 182/344 (52.91%), Query Frame = 1
Query: 4 LDDDESGFGNVCEGTRKDSDGDGIPNDYDNCPHIANAEXXXXXXXXXXXVCDNDKDGDNIADV-----------DDNCVYVPNPDQRHTINYDMDARPVGLACVDDYDGDKVPDADDHCPFNSNLHMLTFKENQQVDLAKDDVSQADQPKARWRVNSNGRDVEQLQATNRPSLLLGKQSYSDVEYSGVLHVNTDVGDDYAGVVFGYQNNKRFYVMMWRNENKNY--GNTSYLAGTRGIQIKRVNSNGG---ELGSALWFSSDTWNKVDLLWQDPRMEGWKHRESYIFKIQFQASLSRMRFKLQKGEEVISDSGYIHDELITGGRLGVYTHGQGDVIFSRLTAKC 987
LD D G+ C+ +D D DG N+ DNCP++ NA Q D+DKDG A DNC VPNPDQ+ + D D R G AC DD+D D VPD DD CP N ++ F+ Q + L SQ D W V G+++ Q + P L +G ++ V++SG +NT+ DDYAG VFGYQ++ RFYV+MW+ ++Y N + G G+ +K VNS G L +ALW + +T +V LW DPR GWK +Y +++ + +R + +G+++++DSG I+D+ GGRLG++ Q V FS L +C
Sbjct: 845 LDSDSDRIGDTCD-NNQDIDEDGHQNNLDNCPYVPNANQA-----------DHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDS---DGDGR--GDACKDDFDHDSVPDIDDICPENVDISETDFRRFQMIPLDPKGTSQND---PNWVVRHQGKELVQTVNCD-PGLAVGYDEFNAVDFSGTFFINTERDDDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYEC 1167 The following BLAST results are available for this feature:
BLAST of TCONS_00016956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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