TCONS_00017113-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017113-protein
Unique Name	TCONS_00017113-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	565

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017113-protein ID=TCONS_00017113-protein|Name=TCONS_00017113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
MTNYSVHNEGYEKDEETGKYSAYNKTFDPEKGGDNEVRMTIDKNGIAQRK
KEEAEGSEDEERGGWGNKIEFVLAIVGYAVGLGNVWRFPYLAQKNGGGAF
LIPYILSLALMGIPIFYMELAIGQRLRRGPMHVWNKLCPSLTGVGLSSVV
VSFLVGCYYNMIVAWCFYYLFISFQAEVPYAKCPCAGGVTSCNRTHGIVK
ECELSSPTTYYWYRGALATTSSIDDSGVFNWKLALCLLLAWVVLFAITCK
GTESMGKAVYFTALFPYVVLIIFFIRAMMLEGAADGIKHMFTPEFDKLAK
AEVWLDASTQIFYSLGLAFGGLISMASYNEINNNIVRDALLVSVVNCSTS
IFAGVVIFGILGYKATVNFNHCEEMKSMGYNKTCDLKVFLDDVAKGPGLT
FIAFTEAMSTMDVTQLWSVMFFMMLLTLGIGSMLGTYEAVRTTVIDLKII
PARKEIVSLVLCVASFGFGLLFCQGSGQYWLTMFDSFAANIGLLTIALCE
VIIIMYIYGIKKFEKDIEFMLGSKPSLYWKIMWMFVTPGLTFCIIIASFW
GLASNGITYIRWXQT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009570	XLOC_009570	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017113	TCONS_00017113	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 258..275 score: 55.1 coord: 411..430 score: 50.57 coord: 490..510 score: 32.86 coord: 99..118 score: 52.79 coord: 530..550 score: 30.6 coord: 143..169 score: 43.9 coord: 70..91 score: 71.39 coord: 340..360 score: 44.42
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 62..554 e-value: 7.7E-176 score: 585.7
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS00610	NA_NEUROTRAN_SYMP_1	coord: 86..100
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 61..549 score: 88.457
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 62..552

Blast

[Close]

BLAST of TCONS_00017113-protein vs. Swiss-Prot (Human)
Match: S6A19 (Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Homo sapiens GN=SLC6A19 PE=1 SV=1)

HSP 1 Score: 495.738 bits (1275), Expect = 8.878e-170
Identity = 242/568 (42.61%), Postives = 352/568 (61.97%), Query Frame = 0

Query:   37 VRMTIDKNGIAQR-----KKEEAEGSEDEERGGWGNKIEFVLAIVGYAVGLGNVWRFPYLAQKNGGGAFLIPYILSLALMGIPIFYMELAIGQRLRRGPMHVWNKLCPSLTGVGLSSVVVSFLVGCYYNMIVAWCFYYLFISFQAEVPYAKCPCAGGVTSCNRTHGIVKECELSSPTTYYWYRGALATTSSIDDSGVFNWKLALCLLLAWVVLFAITCKGTESMGKAVYFTALFPYVVLIIFFIRAMMLEGAADGIKHMFTPEFDKLAKAEVWLDASTQIFYSLGLAFGGLISMASYNEINNNIVRDALLVSVVNCSTSIFAGVVIFGILGYKATVNFNHC---------------------EEMKSMGYN--------------KTCDLKVFLDDVAKGPGLTFIAFTEAMSTMDVTQLWSVMFFMMLLTLGIGSMLGTYEAVRTTVIDLKIIPAR--KEIVSLVLCVASFGFGLLFCQGSGQYWLTMFDSFAANIGLLTIALCEVIIIMYIYGIKKFEKDIEFMLGSKPSLYWKIMWMFVTPGLTFCIIIASFWGLASNGITYIRW 562
            VR+ +   G+  R     + E  E  E   R  W NK +++L  +G+ VGLGNVWRFPYL Q +GGGAF+IP+++ L L GIP+ Y+E AIGQRLRRG + VW+ + P+L G+GL+S++ SF+VG YYN I++W  +YLF SFQ  +P++ CP     T      G V EC  SSP  Y+WYR  L  ++SI DSG   W + LCL  AW VL+  T +G E+ GKAVY T+  PYVVL IF IR + L+GA +GI  +FTP   +LA+ + WLDA  Q+F+S  LAFGGLIS +SYN ++NN  +D+++VS++N  TS++  +V++ ++G++AT  ++ C                     E    M                 +TCD+  FL +  +G GL FI FTEA++ M ++ LWSV+FF+ML  LG+ SM G  E V   + DL++IP +  KE+++ ++C+ +F  G +F   SGQYWL++ DS+A +I LL IA CE+  ++Y+YG+ +F KDIEFM+G KP+++W++ W  V+P L   I +  F    S  +TY  W
Sbjct:    2 VRLVLPNPGLDARIPSLAELETIEQEEASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSFQEPLPWSDCPLNENQT------GYVDECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIW 563

The following BLAST results are available for this feature:

BLAST of TCONS_00017113-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017113-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S6A19	8.878e-170	42.61	Sodium-dependent neutral amino acid transporter B(...	[more]

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TCONS_00017113-protein (polypeptide) - C. hemisphaerica