TCONS_00017415-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017415-protein
Unique Name	TCONS_00017415-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	272

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017415-protein ID=TCONS_00017415-protein|Name=TCONS_00017415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
HSLKEKEPVPLNVHHMPICITFGFIEDEKKGQQLIIDPEEKEESIIDGKL
MMAFNIHNEVCCVQMSGGVSVDYEQLLNCGNIAALKAEEITVVLKEILEE
ERIKRLPKKIEKKAGLKTPATPREFITKTTAEPTEVEMITLSSDENDTAR
NPIAIVSDESEPLKEQVTNYLGKGTASLGEGGESAWVMSSGGEEEDNEGE
DMEHGSNEKMVDNDESEDSEEDEFVVMQADVLAEKTQTTNNNMKIDTSPK
HDEINADKKKKKRKRKKDQSIT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009754	XLOC_009754	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017415	TCONS_00017415	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027408	PNPase/RNase_PH_dom
IPR015847	ExoRNase_PH_dom2

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain	GENE3D	3.30.230.70		coord: 1..119 e-value: 7.0E-21 score: 74.2
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 15..83 e-value: 3.6E-12 score: 46.0
IPR015847	Exoribonuclease, phosphorolytic domain 2	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 11..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..272

Blast

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BLAST of TCONS_00017415-protein vs. Swiss-Prot (Human)
Match: EXOS9 (Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.021e-30
Identity = 81/272 (29.78%), Postives = 141/272 (51.84%), Query Frame = 0

Query:    1 HSLKEKEPVPLNVHHMPICITFGFIEDEKKGQQLIIDPEEKEESIIDGKLMMAFNIHNEVCCVQMSGGVSVDYEQLLNCGNIAALKAEEITVVLKEILEEERIKRLPKKIEKKAG----LKTPATPREFITKTTAEPTEVEMITLSSDENDTARNPIAIVSDESEPLKEQVTNYLGKGTASLGEGGESAWVMSSGGEEEDNEGEDMEHGSNEKMVDNDES-------------------EDSEEDEFVVMQADVLAEKTQTTNNNMKIDTSP 249
            ++ +E++PVPL++HHMPIC++F F +   +G  L++DP E+EE ++DG L++A N H E+C +Q SGG+ +  +Q+L C  IA +K  EIT ++ + LE +      +K+ K+ G     ++ A  R    K    P +   +   ++E      P + V   S P+          GTA +GEG E++W     G+ ED+E ED E G ++ ++ +                       DSEE+E ++++ D   +K +T   + K + +P
Sbjct:  175 YTPEERDPVPLSIHHMPICVSFAFFQ---QGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIAGVKVAEITELILKALEND------QKVRKEGGKFGFAESIANQRITAFKMEKAPIDTSDVEEKAEEIIAEAEPPSEVV--STPV------LWTPGTAQIGEGVENSW-----GDLEDSEKEDDEGGGDQAIILDGIKMDTGVEVSDIGSQDAPIILSDSEEEEMIILEPDKNPKKIRTQTTSAKQEKAP 424

The following BLAST results are available for this feature:

BLAST of TCONS_00017415-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017415-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EXOS9	1.021e-30	29.78	Exosome complex component RRP45 OS=Homo sapiens GN...	[more]

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TCONS_00017415-protein (polypeptide) - C. hemisphaerica