TCONS_00018008-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018008-protein
Unique Name	TCONS_00018008-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1062

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018008-protein ID=TCONS_00018008-protein|Name=TCONS_00018008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1062bp
MFRTFVIITFFLSHYVTPLKHYVIKYPTNETINLLTPKCIGKNCGPEMAG
WSLMNIPGSWALCKTKPDSQNKRFILETPTINLPPDLPSPNKLYITINAS
FNKCQPEGSTCKEKLLLETLYSTSKGFFTEYLYLISEPKLKGTFQEHTRF
IEERNIKSISLTFMSSYFCGVIRELSISFVYCPTEVVNMVQYPNLSADST
GNGICLQNSTNKKPGQLLRRQCSAAGDAKDSGRCVCEKGMMGYANETKCE
ACDVNSYKPLIGNEACQRCPNNSRSNTNRTFCDCNVGFRRYNESQADSPC
FSMEPCLLIRVEAGSLGTYIFPQSPVGTTVKQDCTYGSVGEGFVLSRTCV
MNQYGRSVWSDVHINGNCRHAPCPAEVINNEKYGIYTFPQSRAGQSIQYS
CTFGSRDQRNTTTRARSCILDKPSNKMYEWRVYWADIDLGGCRSYKDFMA
DVDKVNITKANVEEILKSFKSITTNTSYQDMVVSNATKFLKKSLSVAETE
EAFDLILTVVDDLTSKVDITSSQSSSEMLTTLDLLADALITSPLSNQTDS
FSFNGTNFGFGLKAIPQNYSQDLISRIVETNDVISVELVKQAESSRNDTF
EEGIEIPKELFKSFNESANFLYSYIFKDGSLFVSNTSYHDNNNNNNNNKQ
NKMVSSTLDGHVLAVSVHNKTIKGLKQPVKYTTKVSKANENGVCAFWKIE
ENPAFNRWSTEGCNISRTFILNNSRYVTCQCDHMTSFGVLLNIYEESFKM
VDSFALSLVSQIGCYVSIGSLLITLVALSFLKELRTKTANKILINLSLSM
LCLLVSFLAGIQFKSSEDACPVIGVLLHMFVLTTFCWMCIEALSLYRKAV
RTFKNRGEGKIFYRTSFVVGWGVPLLIALTTRFSGYFSIPPVDKRVHCMI
SGLAFKYTLLLPVSVILAINMILFIPVLRKVQGHITTRSSFKKIPKPKRL
RRRVRVTISCSVLLGLTWVFAYLSIGGASYVFQWLFAIINSLQGFVILLF
HVFLNDRVIKSWRTFFNVQSKHNKSSMSGSSVYRKDTSPIWMRSIKKEQK
QLILEILHGPLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010091	XLOC_010091	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018008	TCONS_00018008	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR011641	Tyr-kin_ephrin_A/B_rcpt-like
IPR000203	GPS
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 822..845 score: 28.11 coord: 907..932 score: 24.58 coord: 983..1004 score: 27.66 coord: 953..973 score: 22.28 coord: 758..782 score: 24.88
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 756..997 e-value: 5.5E-32 score: 110.9
IPR011641	Tyrosine-protein kinase ephrin type A/B receptor-like	SMART	SM01411	GCC2_GCC3_2	coord: 242..284 e-value: 1.1E-4 score: 31.6
IPR011641	Tyrosine-protein kinase ephrin type A/B receptor-like	PFAM	PF07699	Ephrin_rec_like	coord: 244..274 e-value: 8.9E-7 score: 28.5
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 690..746 e-value: 4.6E-10 score: 49.4
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 694..740 e-value: 1.0E-12 score: 48.4
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 691..746 score: 14.129
None	No IPR available	GENE3D	2.10.50.10		coord: 236..300 e-value: 7.8E-5 score: 22.5
None	No IPR available	GENE3D	1.20.1070.10		coord: 743..1041 e-value: 1.5E-29 score: 102.4
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 755..1032
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 756..1005 score: 28.572

Blast

[Close]

BLAST of TCONS_00018008-protein vs. Swiss-Prot (Human)
Match: AGRG6 (Adhesion G-protein coupled receptor G6 OS=Homo sapiens GN=ADGRG6 PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 6.640e-46
Identity = 169/609 (27.75%), Postives = 282/609 (46.31%), Query Frame = 0

Query:  433 YWADIDLGGCRSYKDFMAD------VDKVNITKANVEEILKSFKSITTNTSYQDMVVSNATKFLKKSLSVAETEEAFDLI---LTVVDDLTSKVDITSSQSSSEMLTTLDLLADALITSPLSNQTDSFSFNGTNFGFGLKAIPQNYSQ-DLISRIVETNDVISVELVKQAESSRNDTFEEGIEIPKELFKSFNESANFLYSYIFKDGSLFVSNTSYHDNNNNNNNNKQNKMVSSTLDGHVLAVSVHNKTIKGLKQPVKYTTKVSKANE--NGVCAFWKIEENPAFNRWSTEGCNISRTFILNNSRYVTCQCDHMTSFGVLLNIYEESFKM--VDSFALSLVSQIGCYVSIGSLLITLVALSFLKELRTKTANKILINLSLSMLCLLVSFL--AGIQFKSSEDACPVIGVLLHMFVLTTFCWMCIEALSLYRKAVRTFKNRGEGKIFYRTSFVVGWGVPLLIA---LTTR----FSGYFSIPPVDKRVHCMISG-LAFKYTLLLPVSVILAINMILFIPVLRKVQGHITTRSSFKKIPKPKRLR----RRVRVTISCSVLLGLTWVFAYLSIGGASYVFQWLFAIINSLQGFVILLFHVFLNDRVIKSWR 1013
            YW  +D+  C    + +A+       D  N+T AN+  I++  K I       D+ + +    +  ++  +   +  +     L  +D+L  K+D+ S+  S   +TT +L   AL  S L   T++ S    NF  GL +  ++Y Q D  S  V+        ++       N + E+ + + +  F  FN++       +F+D                     Q K    TL  +V+A S+ N TI+ LK PV+   K ++  E  + +CAFW + +N +F  W+T GC   R    +++    C C+H T FGVL+++   + ++   ++  L+ +S IGC +S      TL+     ++LR    +KIL+NLS ++L L + FL    I   + +  C  + VLLH F+L TF WM +EA+ +Y   V+ F       I      ++GWG+P L+    L +R      G  S         C I   + F  T      V+  +N+ +FI V+ ++ G    RS+       + LR    R +R  +S + LLG+TW FA+ + G  +  F +LF+I NSLQG  I +FH  + + V K WR
Sbjct:  571 YWGPVDISNCLKEANEVANQILNLTADGQNLTSANITNIVEQVKRIVNKEENIDITLGSTLMNIFSNILSSSDSDLLESSSEALKTIDELAFKIDLNST--SHVNITTRNL---ALSVSSLLPGTNAIS----NFSIGLPSNNESYFQMDFESGQVDP----LASVILPPNLLENLSPEDSVLVRRAQFTFFNKTG------LFQDVG------------------PQRK----TLVSYVMACSIGNITIQNLKDPVQIKIKHTRTQEVHHPICAFWDLNKNKSFGGWNTSGCVAHRD---SDASETVCLCNHFTHFGVLMDLPRSASQLDARNTKVLTFISYIGCGISAIFSAATLLTYVAFEKLRRDYPSKILMNLSTALLFLNLLFLLDGWITSFNVDGLCIAVAVLLHFFLLATFTWMGLEAIHMYIALVKVFNTYIRRYILKFC--IIGWGLPALVVSVVLASRNNNEVYGKESYGKEKGDEFCWIQDPVIFYVTCAGYFGVMFFLNIAMFIVVMVQICGRNGKRSN-------RTLREEVLRNLRSVVSLTFLLGMTWGFAFFAWGPLNIPFMYLFSIFNSLQGLFIFIFHCAMKENVQKQWR 1126

The following BLAST results are available for this feature:

BLAST of TCONS_00018008-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018008-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRG6	6.640e-46	27.75	Adhesion G-protein coupled receptor G6 OS=Homo sap...	[more]

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TCONS_00018008-protein (polypeptide) - C. hemisphaerica