TCONS_00018078-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018078-protein
Unique Name	TCONS_00018078-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	443

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018078-protein ID=TCONS_00018078-protein|Name=TCONS_00018078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MGKMFKDKVLPFVTAVKAKNAWKEETVHKRDNYIENVTVHGVSKAVNSKR
SERYFWISLVISCVFALSYGLYLMVHKYRSREVNLHIQDQIHDKLELPSI
TICSNNRIKFDYVPGEQGPGDLTTAFSEGFYEFASKFPPFCARFKGHCNF
TEEFSTFSRNDPCVTWNMDGLIKQELPGLNSGVRMMFFVNETSDRMQQGF
IENSISVVIHFAREYPSIYFDRLELTPGVETRIELSKKMFLRLPEPYPSN
CRTDNAFMDITKRWSYTRTSCLELCYNRQGLKECGDVLQPRFRCLIPDWM
YQKYKQNRTVADINACYFTLFQNFDLSNNEICDCPSACSEVIYSRRVHTV
PMNEKQIFQQLDYYDVNVGDQQKFKESLFVFSFYYPRLGFELVSEKPAYV
LSDVANDFGGLLGLCIGASIMSLFELIIIFCLSVFPKWQFKGK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010136	XLOC_010136	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018078	TCONS_00018078	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 93..109 score: 37.88 coord: 409..425 score: 44.94 coord: 375..395 score: 21.71 coord: 53..70 score: 22.0 coord: 395..409 score: 32.0
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 33..115 e-value: 3.4E-17 score: 62.5 coord: 145..427 e-value: 2.2E-41 score: 142.2
None	No IPR available	GENE3D	2.60.470.10		coord: 88..383 e-value: 2.5E-14 score: 53.0
None	No IPR available	GENE3D	1.10.287.770		coord: 38..87 e-value: 0.0089 score: 15.9
None	No IPR available	GENE3D	1.10.287.770		coord: 384..437 e-value: 4.1E-14 score: 51.8

Blast

[Close]

BLAST of TCONS_00018078-protein vs. Swiss-Prot (Human)
Match: ASIC5 (Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.130e-19
Identity = 98/447 (21.92%), Postives = 181/447 (40.49%), Query Frame = 0

Query:   36 NVTVHGVSKAV-NSKRSERYFWISLVISCVFALSYGLYLMVHKYRSREVNLHIQDQIHDKLELPSITICSNNRIKFDYVP--------------------------GEQGPGDLTTAF----------SEGFYEFASKFPPFCARFKGHCNFTEEFSTFSRNDPCVTWNMDGLI--KQELPGLNSGVRMMFFVNET--SDRMQQGFIENSISVVIHFAREYPSIYFDRLELTPGVETRIELSKKMFLRLPEPYP-SNCRTDNAFMDITKRWSYTRTSCLELCYNRQGLKECGDV------------LQPRFRCLIPDWMYQKYKQNRTVADINACYFTLFQNFDLSNNEICDCPSACSEVIYSRRVHTVPMNEKQIFQQLDYYDVNVGDQQKF-KESLFVFSFYYPRLGFELVSEKPAYVLSDVANDFGGLLGLCIGASIMSLFELI 427
            + + HG+   V N  +  R  W+ +V+  V  +++ +Y+ +  Y +      I+ Q  +K+E P++T C+ NR + D V                           G +   D   +           ++GFY   S     C  F   C+  +    F+    C T+N    +  K+++     G+ ++F VN+   +D    GF++  I  VIH  ++ P   FD L L   V     ++ +    + + YP   C  +    + +   SY+ + CL+ C  +   K+CG V            LQ  F C+ P   + ++K   TV   N+                  CP +C E+ Y   +       ++    L Y    +   +K+ +E+L      Y  L +++  ++ A  +S++  D GG LGL  GAS++++ E+I
Sbjct:   44 STSFHGIHNIVQNRSKIRRVLWLVVVLGSVSLVTWQIYIRLLNYFTWPTTTSIEVQYVEKMEFPAVTFCNLNRFQTDAVAKFGVIFFLWHIVSKVLHLQEITANSTGSREATDFAASHQNFSIVEFIRNKGFYLNNSTLLD-CEFFGKPCSPKDFAHVFTEYGNCFTFNHGETLQAKRKVSVSGRGLSLLFNVNQEAFTDNPALGFVDAGIIFVIHSPKKVPQ--FDGLGLLSPVGMHARVTIRQVKTVHQEYPWGECNPNIKLQNFS---SYSTSGCLKECKAQHIKKQCGCVPFLLPGYGIECDLQKYFSCVSPVLDHIEFKDLCTVGTHNS-----------------SCPVSCEEIEYPATISYSSFPSQK---ALKYLSKKLNQSRKYIRENLVKIEINYSDLNYKITQQQKAVSVSELLADLGGQLGLFCGASLITIIEII 464

The following BLAST results are available for this feature:

BLAST of TCONS_00018078-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018078-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC5	3.130e-19	21.92	Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00018078-protein (polypeptide) - C. hemisphaerica