TCONS_00018144-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018144-protein
Unique NameTCONS_00018144-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length973

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018144-protein ID=TCONS_00018144-protein|Name=TCONS_00018144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=973bp
MFGGHHGDDGGGVNQMWYQQMPANEEERLLMEQRFREEQLAKEEAMKNHL
MRRFNQPSNILMPGTIAPLYAQQDCVELMTLEKMTGVEKLRRRQARKSRY
KIFQIKTFNLLERPSNSGALFYHGMVFVLILASLFLSVLITIPKYETDKT
IQSAVYYLEVSLVIIFSIEYILRIWSCSCHGNYAGFWGKLRFIKKPYQVI
DIIVIVATTVVVMTSEHGQANLLSVSMFRFLRFLQVLRILRLDRQRGAFK
IVSHVIYEHRQELLTCWYMSFILLVACTFLVYLAEKSDDKNGNPSDSGEL
DNLGDGLYWGVITLSTVGYGDFSPKNWVAKVIVCIFAFIGTAFFALPAGI
LGSGFALQVAQNQKQKHFNRRRVPAALVIQYAWRAYAAHPSRKSDVTWVP
HQSVVTHHTKEKKFSYYYGKPKNSPSQTPTTGRRSVVMNFKRKLNASRIN
SYVDGDTLQSRRSSIGATIPTALDIRDRCQSEGNLLLVSPNNVEDHQATI
VSLPPQHYDDYQDTLMNGGHDPRFHGQPAHFASTMDVQLQPLMEKDKNCI
RFIRKTKLFIYIRKFKEECRPYDVKDVIEQYTSGQMDMFSFIKRFQSRME
TAIGIKEDQEEDNGLNVRITRVEEKVNVMDEKLDTILELLQNRKHNLKCQ
HNSHGGGTGDDMRRFSNGTGSTEIDVPMSDSDESNDGFHHQDPIDGSKRA
ERKRGATLESLELTKRLEKLKDEEETRDALSNERRARAESRFTVTPSFLP
EDKETEIQPEAVVPEENINLPGSSNKSSIEKLSPPSCPISLQKKYQSVPN
IPKHTNLKDPNDEPRRSSSVHFDESSLVKHRSQSDVVSIYDDIKQPNNRL
HPSHSSRISRLTRSSDDVRGNAYVSDLESDESSKSSTPKEHSSPRSSRTT
IMEEDEKEGRGAHPNKITDKVTVDTPLKSTHASNLTRTASEPLFIKHEEN
VELETIQNGYAQGASKSAFELNC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010182XLOC_010182Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018144TCONS_00018144Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003937K_chnl_volt-dep_KCNQ
IPR028325VG_K_chnl
IPR013821K_chnl_volt-dep_KCNQ_C
IPR005821Ion_trans_dom
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0008076voltage-gated potassium channel complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 703..733
NoneNo IPR availableGENE3D1.20.120.350coord: 119..263
e-value: 1.4E-18
score: 66.4
NoneNo IPR availableGENE3D1.10.287.70coord: 264..369
e-value: 2.5E-23
score: 81.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 648..707
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 722..919
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 119..356
IPR003937Potassium channel, voltage dependent, KCNQPRINTSPR01459KCNQCHANNELcoord: 185..204
score: 54.35
coord: 249..268
score: 43.06
coord: 165..184
score: 40.81
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 329..355
score: 27.26
coord: 262..285
score: 26.03
coord: 157..180
score: 28.14
coord: 233..259
score: 21.34
coord: 300..322
score: 38.77
IPR013821Potassium channel, voltage dependent, KCNQ, C-terminalPFAMPF03520KCNQ_channelcoord: 534..641
e-value: 2.5E-18
score: 66.5
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 125..358
e-value: 7.3E-24
score: 84.2

Blast
[Close]
BLAST of TCONS_00018144-protein vs. Swiss-Prot (Human)
Match: KCNQ5 (Potassium voltage-gated channel subfamily KQT member 5 OS=Homo sapiens GN=KCNQ5 PE=1 SV=3)

HSP 1 Score: 362.459 bits (929), Expect = 3.606e-110
Identity = 211/573 (36.82%), Postives = 313/573 (54.62%), Query Frame = 0 
Query:   96 RKSRYKIFQIKTFNLLERPSNSGALFYHGMVFVLILASLFLSVLITIPKYETDKTIQSAVYYLEVSLVIIFSIEYILRIWSCSCHGNYAGFWGKLRFIKKPYQVIDIIVIVATTVVVMTSEHGQANLLSVSMFRFLRFLQVLRILRLDRQRGAFKIVSHVIYEHRQELLTCWYMSFILLVACTFLVYLAEKSDDKNGNPSDSGELDNLGDGLYWGVITLSTVGYGDFSPKNWVAKVIVCIFAFIGTAFFALPAGILGSGFALQVAQNQKQKHFNRRRVPAALVIQYAWRAYAAHPSRKSDVTWVPHQSVVTHHTKEKKFSYYYGKPKNSPSQTPTTGRRSVVMNFKRKLNASRINSYVDGDTLQSRRSSIGATIPTALDIRDRCQSEGNLLLVSPNNVEDHQA-----------TIVSLPPQHYDDYQDTLMNGGHDPRFHGQPAHFASTMDVQLQPLMEKDKNCIRFIRKTKLFIYIRKFKEECRPYDVKDVIEQYTSGQMDMFSFIKRFQSRMETAIG-------------IKEDQEEDNGLNV--RITRVEEKVNVMDEKLDTILELLQN 642
            R  +Y+  Q   +N+LERP    A  YH  VF+L+   L LSV  TIP  E  K   S +  LE  ++++F +E+I+RIWS  C   Y G+ G+LRF +KP+ VID IV++A+  VV  S   Q N+ + S  R LRFLQ+LR++R+DR+ G +K++  V+Y H +EL+T WY+ F++L+  +FLVYL EK  +K        E     D L+WG ITL+T+GYGD +P  W+ +++   FA +G +FFALPAGILGSGFAL+V +  +QKHF +RR PAA +IQ  WR+YAA     S  TW PH   +   +  KK      + + S SQ          ++FK ++  +       G +++SR++S+G     + DI     +EG     SP  V+   +            + S  P+   D    L   G D  +  +        DV ++ L    K  IR IR  K  +  RKFKE  RPYDVKDVIEQY++G +DM   IK  Q+R++  +G             I  + E  + L++  R+ +VE++V  ++ KLD +L++ Q 
Sbjct:  104 RNVKYRRVQNYLYNVLERP-RGWAFIYHAFVFLLVFGCLILSVFSTIP--EHTKLASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVV--SAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANK--------EFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKK-----EQGEASSSQK---------LSFKERVRMASPR----GQSIKSRQASVGDRRSPSTDI----TAEG-----SPTKVQKSWSFNDRTRFRPSLRLKSSQPKPVIDADTAL---GTDDVYDEKGCQ----CDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQITSDKKSREKITAEHETTDDLSMLGRVVKVEKQVQSIESKLDCLLDIYQQ 629
The following BLAST results are available for this feature:
BLAST of TCONS_00018144-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNQ53.606e-11036.82Potassium voltage-gated channel subfamily KQT memb... [more]
back to top