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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018144 ID=TCONS_00018144|Name=TCONS_00018144|organism=Clytia hemisphaerica|type=transcript|length=3592bpRun BLAST on NCBI protein sequence of TCONS_00018144-protein >TCONS_00018144-protein ID=TCONS_00018144-protein|Name=TCONS_00018144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=973bp MFGGHHGDDGGGVNQMWYQQMPANEEERLLMEQRFREEQLAKEEAMKNHLRun BLAST on NCBI transcript from alignment at sc0000290:81154..154380- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018144 ID=TCONS_00018144|Name=TCONS_00018144|organism=Clytia hemisphaerica|type=transcript|length=73227bp|location=Sequence derived from alignment at sc0000290:81154..154380- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000290:81154..154380- >TCONS_00018144 ID=TCONS_00018144|Name=TCONS_00018144|organism=Clytia hemisphaerica|type=CDS|length=52596bp|location=Sequence derived from alignment at sc0000290:81154..154380- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018144 vs. Swiss-Prot (Human)
Match: KCNQ5 (Potassium voltage-gated channel subfamily KQT member 5 OS=Homo sapiens GN=KCNQ5 PE=1 SV=3) HSP 1 Score: 338.576 bits (867), Expect = 9.973e-99 Identity = 206/573 (35.95%), Postives = 307/573 (53.58%), Query Frame = 2
Query: 305 RKSRYKIFQIKTFNLLERPSNSGALFYHGMVFVLILASLFLSVLITIPKYETDKTIQSAVYYLEVSLVIIFSIEYILRIWSCSCHGNYAGFWGKLRFIKKPYQXXXXXXXXXXXXXXMTSEHGQANLLSVSMFRFLRFLQVLRILRLDRQRGAFKIVSHVIYEHRQELLTCWYMSFILLVACTFLVYLAEKSDDKNGNPSDSGELDNLGDGLYWGVITLSTVGYGDFSPKNWVAKVIVCIFAFIGTAFFALPAGILGSGFALQVAQNQKQKHFNRRRVPAALVIQYAWRAYAAHPSRKSDVTWVPHQSVVTHHTKEKKFSYYYGKPKNSPSQTPTTGRRSVVMNFKRKLNASRINSYVDGDTLQSRRSSIGATIPTALDIRDRCQSEGNLLLVSPNNVEDHQA-----------TIVSLPPQHYDDYQDTLMNGGHDPRFHGQPAHFASTMDVQLQPLMEKDKNCIRFIRKTKLFIYIRKFKEECRPYDVKDVIEQYTSGQMDMFSFIKRFQSRMETAIG-------------IKEDQEEDNGLNV--RITRVEEKVNVMDEKLDTILELLQN 1945
R +Y+ Q +N+LERP A YH VF+L+ L LSV TIP E K S + LE ++++F +E+I+RIWS C Y G+ G+LRF +KP+ I IV + + S Q N+ + S R LRFLQ+LR++R+DR+ G +K++ V+Y H +EL+T WY+ F++L+ +FLVYL EK +K E D L+WG ITL+T+GYGD +P W+ +++ FA +G +FFALPAGILGSGFAL+V + +QKHF +RR PAA +IQ WR+YAA S TW PH + + KK + + S SQ ++FK ++ + G +++SR++S+G + DI +EG SP V+ + + S P+ D L G D + + DV ++ L K IR IR K + RKFKE RPYDVKDVIEQY++G +DM IK Q+R++ +G I + E + L++ R+ +VE++V ++ KLD +L++ Q
Sbjct: 104 RNVKYRRVQNYLYNVLERP-RGWAFIYHAFVFLLVFGCLILSVFSTIP--EHTKLASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPF--CVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANK--------EFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKK-----EQGEASSSQK---------LSFKERVRMASPR----GQSIKSRQASVGDRRSPSTDI----TAEG-----SPTKVQKSWSFNDRTRFRPSLRLKSSQPKPVIDADTAL---GTDDVYDEK----GCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQITSDKKSREKITAEHETTDDLSMLGRVVKVEKQVQSIESKLDCLLDIYQQ 629 The following BLAST results are available for this feature:
BLAST of TCONS_00018144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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