TCONS_00018258-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018258-protein
Unique Name	TCONS_00018258-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	656

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018258-protein ID=TCONS_00018258-protein|Name=TCONS_00018258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp
MLLRKASREKMKKLLILVFIAGFFYLFLKISNITQKQSQKSPPAFQSSYI
ILRQGSSLPLFGAIQSQRRLIGVSEILYNPEIELEARDYIPVKVPTISAP
EQETNSLNLYSWTEICNKNIDSLIYHPLFPHLPEYKKSTVKLDLNIGKNT
GVYLFGKLKPGMAGVYRFHALSTKIAFQVWLSSDENPSNSKLILHENLVR
SKDLELFNSPYHISIVLKTGTSPGKFSLKWLTPGKKEYTLIPSNNLESYP
PDSPMVREENLQKMMILDKKIPLRDMYDSDQNKRRALMFKLPFIPEEDIE
GLFPKCNYDPSYLIKKKITKQYAGQWETHFTSVYPPDETDMVIYHPGMKD
PHIIYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVK
GDRYLVELELLNDQDEKTYRFAEYLYHPKGSNQLCYPENFKWNKTAEVNL
IITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKE
SPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFID
NVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNY
VGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMW
NNLLFT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010261	XLOC_010261	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018258	TCONS_00018258	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008428	Chond_GalNAc
IPR029044	Nucleotide-diphossugar_trans

Vocabulary: **Molecular Function**
Term	Definition
GO:0008376	acetylgalactosaminyltransferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0032580	Golgi cisterna membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0032580	Golgi cisterna membrane
molecular_function	GO:0008376	acetylgalactosaminyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.182.10		coord: 81..285 e-value: 2.3E-7 score: 30.0
IPR008428	Chondroitin N-acetylgalactosaminyltransferase	PFAM	PF05679	CHGN	coord: 361..645 e-value: 1.4E-20 score: 73.5
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 374..653 e-value: 1.2E-10 score: 40.6
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 432..652

Blast

[Close]

BLAST of TCONS_00018258-protein vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 9.648e-75
Identity = 114/322 (35.40%), Postives = 187/322 (58.07%), Query Frame = 0

Query:  354 IYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVKGDRYLVELELLNDQDEKTYRFAEYLY------------------------HPKGSNQLCYPENFKWNKTAEVNLIITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKESPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFIDNVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNYVGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMWN 651
            + GN  L    A  +  + +  +  +H  ++ L  I++VE+  D  +G R+L+ELEL  ++     R +EY++                         P G  +LC P    W +   V+ I+    Q+RW+  F+  +  ++  T D   ++ +VDF+++D  V +AL+ + L +Y Y+RR G F ++  L     ++ +  +IV   DLH+  P + +D +RKH ++GR+A +P++ RL CG++P+ P GYWE  G+G+FGIYKSD++ VGGMN + F+D+WGGEDWELLD VL  G E ERL+++NF+H +HSK+ MW+
Sbjct:  707 VSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELEL-QERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWS 1027

The following BLAST results are available for this feature:

BLAST of TCONS_00018258-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018258-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B4GN4	9.648e-75	35.40	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a...	[more]

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TCONS_00018258-protein (polypeptide) - C. hemisphaerica