TCONS_00018258-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018258-protein
Unique NameTCONS_00018258-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018258-protein ID=TCONS_00018258-protein|Name=TCONS_00018258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp
MLLRKASREKMKKLLILVFIAGFFYLFLKISNITQKQSQKSPPAFQSSYI
ILRQGSSLPLFGAIQSQRRLIGVSEILYNPEIELEARDYIPVKVPTISAP
EQETNSLNLYSWTEICNKNIDSLIYHPLFPHLPEYKKSTVKLDLNIGKNT
GVYLFGKLKPGMAGVYRFHALSTKIAFQVWLSSDENPSNSKLILHENLVR
SKDLELFNSPYHISIVLKTGTSPGKFSLKWLTPGKKEYTLIPSNNLESYP
PDSPMVREENLQKMMILDKKIPLRDMYDSDQNKRRALMFKLPFIPEEDIE
GLFPKCNYDPSYLIKKKITKQYAGQWETHFTSVYPPDETDMVIYHPGMKD
PHIIYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVK
GDRYLVELELLNDQDEKTYRFAEYLYHPKGSNQLCYPENFKWNKTAEVNL
IITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKE
SPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFID
NVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNY
VGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMW
NNLLFT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010261XLOC_010261Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018258TCONS_00018258Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008428Chond_GalNAc
IPR029044Nucleotide-diphossugar_trans
Vocabulary: Molecular Function
TermDefinition
GO:0008376acetylgalactosaminyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0032580Golgi cisterna membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032580 Golgi cisterna membrane
molecular_function GO:0008376 acetylgalactosaminyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.182.10coord: 81..285
e-value: 2.3E-7
score: 30.0
IPR008428Chondroitin N-acetylgalactosaminyltransferasePFAMPF05679CHGNcoord: 361..645
e-value: 1.4E-20
score: 73.5
IPR029044Nucleotide-diphospho-sugar transferasesGENE3D3.90.550.10coord: 374..653
e-value: 1.2E-10
score: 40.6
IPR029044Nucleotide-diphospho-sugar transferasesSUPERFAMILY53448Nucleotide-diphospho-sugar transferasescoord: 432..652

Blast
[Close]
BLAST of TCONS_00018258-protein vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 9.648e-75
Identity = 114/322 (35.40%), Postives = 187/322 (58.07%), Query Frame = 0 
Query:  354 IYGNPLLKRDVADFIVEKVVNAIKEKHKDKYQLKEILSVEQNEDDVKGDRYLVELELLNDQDEKTYRFAEYLY------------------------HPKGSNQLCYPENFKWNKTAEVNLIITSAGQSRWLIHFINTVNQIYKETNDENIAITIVDFDNKDTGVMKALKESPLKKYTYIRRKGKFHKTLALNDAAASITNPDAIVMQVDLHLVIPADFIDNVRKHTIQGRMACSPLLNRLQCGATPQHPTGYWEDEGYGIFGIYKSDWNYVGGMNAKGFQDKWGGEDWELLDSVLSHGFECERLKIKNFHHVFHSKKNMWN 651
            + GN  L    A  +  + +  +  +H  ++ L  I++VE+  D  +G R+L+ELEL  ++     R +EY++                         P G  +LC P    W +   V+ I+    Q+RW+  F+  +  ++  T D   ++ +VDF+++D  V +AL+ + L +Y Y+RR G F ++  L     ++ +  +IV   DLH+  P + +D +RKH ++GR+A +P++ RL CG++P+ P GYWE  G+G+FGIYKSD++ VGGMN + F+D+WGGEDWELLD VL  G E ERL+++NF+H +HSK+ MW+
Sbjct:  707 VSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELEL-QERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMWS 1027
The following BLAST results are available for this feature:
BLAST of TCONS_00018258-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN49.648e-7535.40N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a... [more]
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