TCONS_00018302-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018302-protein
Unique Name	TCONS_00018302-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	492

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018302-protein ID=TCONS_00018302-protein|Name=TCONS_00018302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MGKQQQTTFIKAMYSNEKDSLLKNDSSQSYSSSDETPGTVNRQTPSLNGD
DGKEHFVGIDDIGDYEEDEDKGEDHPLTVSVKSSGSGRSRTAVSGGLDTG
EKGTSNLATMVHIFKGNVGTGILSLPAAVKHAGVVAGPVGLCIIAFIAVH
CMHMLVRCSHFFCRKTGKQAMSYGEVAEECSKGIFKDKAYWPKRIVNLFL
IVTQLGFCAVYFVFVASTIVEVAGWGDKVDKRLVIIILALPVALLSYIRS
LEKLAYLSIIANICCVVGLITIYQYLARNLGDPTRLPMFSGVQNLPMFFA
MALFSFEGIGVVLPLENEMQKPEDFGWVLNVGMGIISCMFVSMGLLGYVA
FGDKIEGSVSLNLPDNYLYDGVKICYAIAMFLTYFLQFYVPINILLPPLL
NKWQKRHGSCFEYTFRTVLVLFTAALAAGIPLLDDFIALIGALASAGLAI
IFPPLIHTLTFWHHGLHPMAFVXAQNHNCPFGVDDNTGWSDV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010273	XLOC_010273	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018302	TCONS_00018302	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 103..463 e-value: 5.6E-71 score: 239.3

Blast

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BLAST of TCONS_00018302-protein vs. Swiss-Prot (Human)
Match: S36A1 (Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 3.896e-109
Identity = 171/431 (39.68%), Postives = 259/431 (60.09%), Query Frame = 0

Query:   60 DDIGDYEEDEDKGEDHPLTVSVKSSGSGRSRTAVSGGLDTGEKGTSNLATMVHIFKGNVGTGILSLPAAVKHAGVVAGPVGLCIIAFIAVHCMHMLVRCSHFFCRKTGKQAMSYGEVA----EECSKGIFKDKAYWPKRIVNLFLIVTQLGFCAVYFVFVASTIVEVAGWGD----------------KVDKRLVIIILALPVALLSYIRSLEKLAYLSIIANICCVVGLITIYQYLARNLGDPTRLPMFSGVQNLPMFFAMALFSFEGIGVVLPLENEMQKPEDFGWVLNVGMGIISCMFVSMGLLGYVAFGDKIEGSVSLNLPDNYLYDGVKICYAIAMFLTYFLQFYVPINILLPPLLNKWQKRHGSCFEYTFRTVLVLFTAALAAGIPLLDDFIALIGALASAGLAIIFPPLIHTLTFWHHGLHPMA 470
            +D  DY   +   E+ P      S G     +  S         T+   T++H+ KGN+GTG+L LP AVK+AG+V GP+ L II  +AVHCM +LV+C+H FCR+  K  + YG+      E       ++ A+W +R+V+ FLIVTQLGFC VYFVF+A    +V    +                 +D RL ++     + LL +IR+L  L+  S++ANI  +V L+ IYQ++ + + DP+ LP+ +  +  P+FF  A+FSFEGIG+VLPLEN+M+ P  F  +L +GM I++ +++S+G LGY+ FG  I+GS++LNLP+ +LY  VK+ Y+I +F TY LQFYVP  I++P  +++  +      +   RTVLV  T  LA  IP LD  I+L+G+++S+ LA+I PPL+   TF+  G+ P+ 
Sbjct:    9 EDYHDYSSTDVSPEESP------SEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMSPLT 433

The following BLAST results are available for this feature:

BLAST of TCONS_00018302-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018302-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S36A1	3.896e-109	39.68	Proton-coupled amino acid transporter 1 OS=Homo sa...	[more]

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TCONS_00018302-protein (polypeptide) - C. hemisphaerica