TCONS_00018386-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018386-protein
Unique Name	TCONS_00018386-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	328

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018386-protein ID=TCONS_00018386-protein|Name=TCONS_00018386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MFHRSSQKKHWLFENSEVIAQAQSQSNQTYIEAATKRCKKHNMSPSNDFL
QYHEEKLLLIYYSQYINDVCHKFKPPVPFSVTGTSLAYFKRFYLNTSVME
FHPREMAFLSIYLACKVDEYNVSIDQFMDQVCSQPNPSLQMFIIDNELLM
LQKLNFHLTVHCPYRPLEGFMIDLKTNKEQIGIDDPEIYRQKTEQFLMKC
SLTDAVLLFPPSQIALAALSYGIGEKFDTYIRKIAGKQSIAKLVSKIKEI
RNNVINFKFPSRDEVSFIEEKLKGCRDGENDPHSDEYHARDNARKEAKEM
QKRKKMEELSNIQQAEERMLATDMSISE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010312	XLOC_010312	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018386	TCONS_00018386	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like
IPR031658	Cyclin_C_2
IPR006671	Cyclin_N
IPR027081	CyclinH/Ccl1

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0070985	TFIIK complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0070985	TFIIK complex
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 290..318
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..328
None	No IPR available	CDD	cd00043	CYCLIN	coord: 58..127 e-value: 3.34694E-7 score: 46.0777
IPR013763	Cyclin-like	GENE3D	1.10.472.10		coord: 7..151 e-value: 1.4E-21 score: 76.2
IPR013763	Cyclin-like	GENE3D	1.10.472.10		coord: 152..315 e-value: 2.7E-18 score: 65.6
IPR013763	Cyclin-like	SUPERFAMILY	47954	Cyclin-like	coord: 11..161
IPR013763	Cyclin-like	SUPERFAMILY	47954	Cyclin-like	coord: 163..279
IPR031658	Cyclin, C-terminal domain 2	PFAM	PF16899	Cyclin_C_2	coord: 162..251 e-value: 2.3E-17 score: 63.2
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 55..158 e-value: 4.9E-7 score: 29.5
IPR027081	CyclinH/Ccl1	TIGRFAM	TIGR00569	TIGR00569	coord: 2..304 e-value: 6.9E-76 score: 253.4

Blast

[Close]

BLAST of TCONS_00018386-protein vs. Swiss-Prot (Human)
Match: CCNH (Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 4.701e-67
Identity = 119/292 (40.75%), Postives = 178/292 (60.96%), Query Frame = 0

Query:    1 MFHRSSQKKHWLFENSEVIAQAQSQSNQTYIEAATKRCKK--HNMSPSND--FLQYHEEKLLLIYYSQYINDVCHKFKPPVPFSVTGTSLAYFKRFYLNTSVMEFHPREMAFLSIYLACKVDEYNVSIDQFMDQVCSQPNPSLQMF--IIDNELLMLQKLNFHLTVHCPYRPLEGFMIDLKTNKEQIGIDDPEIYRQKTEQFLMKCSLTDAVLLFPPSQIALAAL---SYGIGEKFDTYIRKIA----GKQSIAKLVSKIKEIRNNVINFKFPSRDEVSFIEEKLKGCRDGE 279
            M+H SSQK+HW F + E +A+ ++ +N+ +      RCK   +     ND  FL+ HEE  L  YY + + + C  FKP +P SV GT+  YFKRFYLN SVME+HPR +     +LACKVDE+NVS  QF+  +   P    +    I++ ELL++Q+LNFHL VH PYRP EGF+IDLKT      +++PEI R+  + FL + +LTDA LL+ PSQIAL A+   +   G   ++Y+ +       +  +++L+  +K +RN V  ++ P  +EV+ +++KL+ C   E
Sbjct:    1 MYHNSSQKRHWTFSSEEQLARLRADANRKF------RCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYP--ILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAE 284

The following BLAST results are available for this feature:

BLAST of TCONS_00018386-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018386-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCNH	4.701e-67	40.75	Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1	[more]

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TCONS_00018386-protein (polypeptide) - C. hemisphaerica