TCONS_00018386 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018386
Unique Name	TCONS_00018386
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1608

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000297:151301..166751-
coding sequence from alignment at sc0000297:151301..166751-

transcript sequence

>TCONS_00018386 ID=TCONS_00018386|Name=TCONS_00018386|organism=Clytia hemisphaerica|type=transcript|length=1608bp
ccggTGAGATTGAAAACTGCGTGATGCGCTCTGGAATGAACTGGACATTT
TGGAATAAACCTGGACCTCTGAAGAGTAAATCTCCTGTTATCCCAGTGGA
ATACATTCTGGGATCTATGTAGTTTCCTAGTCTGTcagtcgccatttttt
gaggGGCGATACGAAAGACAAAAATTGCGAGGATGTGTAAACTAGCGCCA
AGTCCTTACAAAATATCGGGGATATTTGGGAATGGAATACTCAAATCTGA
TTGGTCGAATTCAAAATCGGaacaaaatatttagaaaatcGGGAAAAGAA
GGCCttaagaaatcgaaagtgaacgAACCGagacagtcgggttcaacata
aAACACAAACACTGAAAATCATGCAGAATTCTTGCTGCCTGCCTGCTCTG
TTAAGCTCTGTTAGCCTGTTCCGAACCAATTTATCATTTACTGGgaaaaa
atgtttcatcGGAGCTCGCAGAAGAAGCATTGGCTTTTCGAAAATTCTGA
GGTCATAGCGCAAGCACAATCACAAAGCAACCAAACATACATTGAAGCAG
CTACAAAACGATGTAAGAAGCACAACATGTCTCCATCAAACGACTTTCTT
CAGTACCATGAAGAAAAACTACTCTTAATCTACTACTCACAATATATTAA
TGACGTTTGTCACAAATTCAAACCGCCCGTGCCATTTAGTGTAACAGGGA
CTTCTTTGGCATACTTCAAAAGATTCTACCTGAACACATCTGTGATGGAG
TTTCACCCACGTGAAATGGCCTTTTTATCAATCTATCTAGCTTGTAAAGT
TGACGAATACAATGTGTCTATCGATCAATTTATGGATCAAGTATGTAGTC
AACCGAATCCAAGCCTACAAATGTTTATCATTGATAATGAGCTTTTAATG
CTCCAGAAACTAAATTTCCACCTGACGGTGCATTGTCCATATAGACCACT
GGAGGGTTTCATGATCGACCTGAAGACAAACAAAGAACAGATCGGGATCG
ATGACCCAGAGATTTACAGACAAAAAACTgaacaatttttgatgaaatgt
TCGCTAACTGACGCAGTGCTTTTGTTCCCTCCCTCACAAATTGCTTTAGC
TGCTCTAAGTTATGGCATTGGAGAGAAATTTGATACTTATATTCGAAAGA
TTGCTGGAAAACAATCCATTGCAAAATTGGTTTCCAAAATTAAAGAGATT
CGCAATAACGTTATTAATTTTAAGTTCCCGAGTCGTGATGAAGTGAGTTT
TATTGAGGAGAAGTTGAAAGGTTGTCGTGATGGCGAGAACGATCCACATT
CTGACGAATACCACGCACGTGACAATGCACGAAAAGAAGCCAAAGAAATG
CAAAAGCGTAAGAAAATGGAGGAACTTTCAAACATTCAGCAAGCTGAAGA
ACGAATGCTTGCAACTGATATGTCAATCTCTGAATAAATTATATTTCgat
tgttttttctattttgggtTTTGTTATTTTGCGATGttcattttaataaa
tttatttcTTCAGAGGAATAAAACTTGACTTTGAGATTAAATCACATAAA
TCCCGATTGAGTTGTGCTTTTATCTTAATGAGAAAAACCTGGAAATTTTG
GCTTCGGG

Run BLAST on NCBI

protein sequence of TCONS_00018386-protein

>TCONS_00018386-protein ID=TCONS_00018386-protein|Name=TCONS_00018386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MFHRSSQKKHWLFENSEVIAQAQSQSNQTYIEAATKRCKKHNMSPSNDFL
QYHEEKLLLIYYSQYINDVCHKFKPPVPFSVTGTSLAYFKRFYLNTSVME
FHPREMAFLSIYLACKVDEYNVSIDQFMDQVCSQPNPSLQMFIIDNELLM
LQKLNFHLTVHCPYRPLEGFMIDLKTNKEQIGIDDPEIYRQKTEQFLMKC
SLTDAVLLFPPSQIALAALSYGIGEKFDTYIRKIAGKQSIAKLVSKIKEI
RNNVINFKFPSRDEVSFIEEKLKGCRDGENDPHSDEYHARDNARKEAKEM
QKRKKMEELSNIQQAEERMLATDMSISE

Run BLAST on NCBI

transcript from alignment at sc0000297:151301..166751-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018386 ID=TCONS_00018386|Name=TCONS_00018386|organism=Clytia hemisphaerica|type=transcript|length=15451bp|location=Sequence derived from alignment at sc0000297:151301..166751- (Clytia hemisphaerica)
CCGGTGAGATTGAAAACTGCGTGATGCGCTCTGGAATGAACTGGACATTT
TGGAATAAACCTGGACCTCTGAAGAGTAAATCTCCTGTTATCCCAGTGGA
ATACATTCTGGGATCTATGTAGTTTCCTAGTCTGTCAGTCGCCATTTTTT
GAGGGGCGATACGAAAGACAAAAATTGCGAGGATGTGTAAACTAGCGCCA
AGTCCTTACAAAATATCGGGGATATTTGGGAATGGAATACTCAAATCTGA
TTGGTCGAATTCAAAATCGGAACAAAATATTTAGAAAATCGGGAAAAGAA
GGCCTTAAGAAATCGAAAGTGAACGAACCGAGACAGTCGGGTTCAACATA
AAACACAAACACTGAAAATCATGCAGAATTCTTGCTGCCTGCCTGCTCTG
TTAAGCTCTGTTAGCCTGTTCCGAACCAATTTATCATTTACTGGGTAAGG
TTTTTCAATTTTTTTTTACTAGTAACCTGGTTTAAAAGTTTTATTTTTTC
ATTGCTCATAGCTGCCAACCCAAAGGAAAGCTCTCAATCCACGCAAAATA
CATTTATATTCTAGCAGGAGGAGGATTAGCCTGGGAATCCAAGCGTTAAA
CTTTTTTCACAGTCTAGTTTATGATATTTTTGCTGCTGGTTTAACAGTCA
GGAACTATTGCAAATTAGGCTATGTTCGCCGATTCTGGCCTAACTTGGAT
ACGATGGCTTAATTAAGCCAGAAATTGTAGCCTAATTAGGCTGGAAGGAA
CAAAATTCCAAATTTTGACTTGGATTTCAAAATCCGCGTCAATATCTAGC
ATGAAATGTCAAATTCTTACTTATTTGAATAAGTTCCAACTGTTTTTTGG
GTAAAATTTGAGCGGACTGAGAAAATATTCAGTTTTTAAATATTATGCTG
TTTCAGCAAAATTATGTTTACATATAATATATATACAGTACAGTCGAAAT
TATTTCAAGATTAATGTAAACAAACGTAATCCAAACTTTGCTTTAGAAAC
ATGTTTTATCTATCTATTTTTTATCTTCATAATAAACTTGTTATGTACAC
TTTTAGATTTTATGAACTTGTCAGCTATAATATATAATAAAACGTAAAAA
AGACCTTCCTCAATTTAAATATTTAAACAATCTATCAAGTGTAAATTTAA
TATCTTAATAACATATCTTAAGATCAGCAAAACCAAAAAACTATACTTTT
AAAGCCCACGATATAACAACAATATACTATGATACATTTTTCAGACAAAA
AATGGCGCGCTGCATGTAGAACTTAAATGGCTTAATTTGGCTAACATGGC
CAAATTAAGCTAAATTTTAATAAGATAATCACATCTTTTCACTCCGCTCT
AAAAAGAGAAAAGTTTTTCGCTTTAAATACTGTTCTTAGTACAAGTAACA
AGTCCATGTAGTAAGATTGACGCGGATTTTACTTGTTCTCAAGATATTTA
GGTTTGAATATTTCATATATCCAAATTAAGCCATTAATATCCTAACTAGG
ATATAAATTCTAGCCTAATTAGGCGAACATCCTAGTTTGGCCATCATAGC
CTAATTTGCAATAGTCCCTGACTGTTTAACGCTTGGTGCAGGTAACTCGC
CTGCAGGGAGATTTTTCCCTGCAATGCAGGTTCGGCCTGATTGGCCAGCT
TTTGGCGTATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCAAGCCATGTGT
TTTTAGACCAGCTCCTGAGTGCCGGGTAGCGCCAACCTAGAGGGGTAGTA
ATTTTCTATACGATTTTCGTGCTCCTCAACATCCAGTTTACGGAATGAAG
AGGTAAATAGCGTTTTAAGGGGGCTTTTGAATTAGGGGGTCCTAAAAGAG
CTCGGGTAAGTAATTACTATTGAGAAGCCGTTTTATGTCAGTAACATCAG
CTCATATCTTTTTATCTTAGCCATGGAAATGTCTTGAAACTTGGTAAATA
TACTCAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAAAAAACTTCGAAAAATGTTTTCCAGGGGCTCGCAAGGA
GAAAAACGGGTAAAAAGTAGCCATTTTTGCCTATTTTTAGCCTGTTTTCA
CCCTCATTAACTAATTACACGCTTTAAAATATTCAAAAGTTTAACAAAAA
CATAGAAAACGTTGGAGTTCATTGAAATCGTTAAGAAAATTAAGGTTACG
TTGTCATTACTGGCAATTTTCAACGTTTCAGGGGGTAAAAAATTCTATTT
TTGCTATATTTCGCCTATTTTGCTTACCTAAGCTAGTTGGAGAGCTCAAG
AATGCTCACAAACCTCATAGAAGTGTGGATAATATTGAACTTCAAAANNN
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NNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTGGTAACTCAGTATACC
CTAAAGAACATCTGTGCCAATTTTCAGCTTGATGGCAATTTTGTCCGGGT
TGTGGTGAAATTTCAACTAATTCTACCTGCCTAGAAGCAATTGTATCGCG
TCCATCAGTAAAGTTAAATAGTGCGAATGCATGTGACTCTGGGAACGAGT
TTGGGTGCAACCTCGTCCCGTGTATCCTAGTTTTTTTTTTACGTTACTGA
TCGATAGAAACGCCATTTACCTGACATTAACCCTTTACCTTCGGGAGCTA
ACCTCTCATGTCCGTTTTTCCACCCTAGGGAAATCGCCACCCGCCCGTTA
CATGTCGGGTGTTGTTAAGAGCGCCCAAGATATAGCACCCGACAAAGTGC
ACCCGACTGTCGGGTGTTAAAATTTCTAACTTCGAACACCCGACAACAGC
ACCCGACTGTCAGGTGCACCGACAGGGTCGTTAATCGAACTTAATCGAAC
TTTGTATTTTGAGAAATTTGTGAGTATTTGATTAAAGTTCGAAACCGAAT
TTAGTCGAACATTAATCGGCCAACAAAGTTCAATTAAGTTCGACAAAGTT
CGATTAAAAATACCGTTTGATTGGTTCGATTAATTACGTCTGGACATTAT
TTTGGGACCCCGGTCCAGGCCCTCCGCGATAAAGCTGCGGAATTTCACAG
CGCCGCGGAATTTCACAGCGCTGCGGAATATGACAACGCAAAAAATGTGA
AATTACGCAACGTTGCGGATCTATGCAATTTCCCGAACTGCTATACTCTG
GACAGTCCGTGGTAAATGTCTGGGGATGAAAAAGAAACTATTTTCCCCAA
ACATGTGACTTGTACACCACCATGCGCATCCATAGAGGCACGCTGTGGGG
CCATCCAAATTTACCACACGATCACCTTACCTAGATGTCCACTGCGTAGT
AGAGGCCACTATGTCTTCCCGTGTTTGAGTACGTCCCGCGGCCAGTACCG
TAACTTGGTCTAATTTCAACATCCCACCTCTAATTCAGACACCCTTTTTA
TCAGCTGAAATTGATAGAAAGGTTGGAACTGTTTTTCTTTGCTTAGTGGT
CAGAGAGGAACAATCCTTTTTCAATCAGTGATTTAAACTTTCATATTATT
CCTGTCTCTAAAGAAGAAGGGATGTCAATATTAGACCAACTTACGGTAAG
ACATATTTCTCTATCTTTACGTACATTGTGCAAACAATGCAACAAACAAA
GTCCAGGGGCATCCGGGGCACTAAATTTCAAAATAAATGTGAAAATCCTT
GGACTGTCTGGGGTATCGGCACAGTTGTAGCATAGCACATAATATAGACA
GTCTAGACTTAAACTCCTATATCAGGATTAGAAAGTAGGCTAGTCTTACC
TCTTTTATTTCTCCCTCTGCAACAATACAGTGCTAGCAAGTTGACACAAC
ACATTGACAAGTACCGTGAGTTGTCCTAAATCCGACAGCCCTGCCTAAAT
CCAACCCCCCAAATAACTGTAATGAAAAATGTTTACAAACATTCCCTCTC
CAAGTTGAACAATAAACTATTGCAAGAACTCTCGAAAAAAAACATCTAAC
AAAATGACTATAATGTCAAGATGTCAATTAATGCGATCAAAAAAGTGTGA
GTTGTAAAAATAATGAGTTGTAAAAATAATTACCTCTATTATTCTGAATC
CGTTGCTCGTCTTTAAAAGGTTAACAATTTTGTAATAAAAAATCATGTTT
TGTATAAGAAGCAATTATTGTTATTTAGTTCAATTGGTTCAGTGTATCAA
ATCTCTCAGTTTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAT
CATATCAAACAACCAGAAGAACAACTTTTCTATTTGTCCAAACATTTTGC
AGATGACCCAGATAATTTAAATATAATCCTGAATGAACATAACCTTTTTT
AAAGTCAGCAAATCCACATGTAAAGTGATATTTGTTGATGGCATAGATTC
AATTATAAAAAAGTTACAATTTACCAAGAGACTGCCCAATGGAAAATAGA
ATATTTCATAATGTTTAGCTTTGTCTCTTAGCAATCTAGACTGCAAAGCG
ATTGGTGCAAGTGTTTGTGCCAAAGGGGACAGGCACAAACAAGCCTAAGG
ATTTGGTGGCTATCTGTGTGTCTGTAAAAGTTTAAATTATTTGCCAATTT
TTACGTTTGAAATATTTTGTGTGAATTTTAACTCGAAAAGCTTATGACTT
TTGAATCACTGAAACTAATTCCTAAGTTATGTACCAAATTTTAAGTTTGT
CCTTTCTCTTCACGGTTTGTGTAATTTACGATGCGCGATCCAACGATTCA
CGATGCGCGATGCACGATCCATGCATATATTATGTTAATTATTCTAATTA
TGCATTTACAGGTTTTAGTAATCACATACAGTATTTTAATTCCTTCTTTT
GTATTCCTGGAAAATCAATGTAAAGTATGCGTGTATATATTTTAGCCTCA
ACAATCAAATCAAATCAAAACATAAACTTTTTTGCCCATGCTTTGAATTG
AGTATCTTGTAACCCTTTTGCTTTCTTTCTTTAAAAAGACGTTTCTCCGA
TTAAACCAACCAAATGCATTGGATTGAGACAGGGTTATAAACAAAAATTT
ACAATGTTGTGGTAAAGTAGGGAAGACGTTTTTTAATGAAGAGCGCGTGT
ATAAGCTCACCTTTTTTGAGAAAGATCAAATGAATTGAATTGATCATCAA
ACAGAGAAAAAGATCAAATAAATAAAAGCACCAGTTGCAATTCACTTGGT
GAAAGGCTTTTATAAGAACATGCCAAAAGTAATGTAGCCAATGATTCCTT
ATTTACCTTATTCGCTGTTCTTAAAAAAATAATAAACGTACAAAAATCCA
AAAATGAGTTTTTTTTAATAAATTTTTCACGCCAAAACTTTTCTATGACG
TCAAAGGCTTTTTCTTTCATTTTAAGAACGAGTGAGGCATGCAGCGAACG
TTTTTTTCTCTCGCTATCAATTTTTGGTTTTTCTACACAGAAGATATAAG
TTATTTTAATCATTCTGATTATGATAAATTATTTCCCCTTTTTTTAATTT
TTTTTTTCGTTATTGTTATAGGATGTTTGTAGCTAGCATTATGAAAACTT
ATTCGTGCATAATTAGAATAATTAACATAAATCGACATAAATTATGCATG
GATCGTGCATCGTGCATCGTGAATCGTTGGATCGCGCATCTTAAATTACA
CAAACCGTTCTCTTCATCACGATAAAAGAACTTTTTGAAAAATCGCATTT
GCACGTTTAGTCATGTTTTATTTTCTTTAACTTTCAGGAAAAAATGTTTC
ATCGGAGCTCGCAGAAGAAGCATTGGCTTTTCGAAAATTCTGAGGTCATA
GCGCAAGCACAATCACAAAGCAACCAAACATACATTGAAGCAGCTACAAA
ACGATGTAAGAAGCACAACATGTCTCCATCAAACGACTTTCTTCAGTACC
ATGAAGAAAAACTACTCTTAATCTACTACTCACAATATATTAATGACGTT
TGTCACAAATTCAAACCGCCCGTGCCATTTAGTGTAACAGGGACTTCTTT
GGCATACTTCAAAAGATTCTACCTGAACACATCTGTGATGGAGTTTCACC
CACGTGAAATGGCCTTTTTATCAATCTATCTAGCTTGTAAAGTTGACGAA
TACAATGTGTCTATCGATCAATTTATGGATCAAGTATGTAGTCAACCGAA
TCCAAGCCTACAAATGTTTATCATTGATAATGAGCTTTTAATGCTCCAGA
AACTAAATTTCCACCTGACGGTGCATTGTCCATATAGACCACTGGAGGGT
TTCATGATCGACCTGAAGACAAACAAAGAACAGATCGGGATCGATGACCC
AGAGATTTACAGACAAAAAACTGAACAATTTTTGATGAAATGTTCGCTAA
CTGACGCAGTGCTTTTGTTCCCTCCCTCACAAATTGCTTTAGCTGCTCTA
AGTTATGGCATTGGAGAGAAATTTGATACTTATATTCGAAAGATTGCTGG
AAAACAATCCATTGCAAAATTGGTTTCCAAAATTAAAGAGATTCGCAATA
ACGTTATTAATTTTAAGTTCCCGAGTCGTGATGAAGTGAGTTTTATTGAG
GAGAAGTTGAAAGGTTGTCGTGATGGCGAGAACGATCCACATTCTGACGA
ATACCACGCACGTGACAATGCACGAAAAGAAGCCAAAGAAATGCAAAAGC
GTAAGAAAATGGAGGAACTTTCAAACATTCAGCAAGCTGAAGAACGAATG
CTTGCAACTGATATGTCAATCTCTGAATAAATTATATTTCGATTGTTTTT
TCTATTTTGGGTTTTGTTATTTTGCGATGTTCATTTTAATAAATTTATTT
CTTCAGAGGAATAAAACTTGACTTTGAGATTAAATCACATAAATCCCGAT
TGAGTTGTGCTTTTATCTTAATGAGAAAAACCTGGAAATTTTGGCTTCGG
G

Coding sequence (CDS) from alignment at sc0000297:151301..166751-

>TCONS_00018386 ID=TCONS_00018386|Name=TCONS_00018386|organism=Clytia hemisphaerica|type=CDS|length=987bp|location=Sequence derived from alignment at sc0000297:151301..166751- (Clytia hemisphaerica)
ATGTTTCATCGGAGCTCGCAGAAGAAGCATTGGCTTTTCGAAAATTCTGA
GGTCATAGCGCAAGCACAATCACAAAGCAACCAAACATACATTGAAGCAG
CTACAAAACGATGTAAGAAGCACAACATGTCTCCATCAAACGACTTTCTT
CAGTACCATGAAGAAAAACTACTCTTAATCTACTACTCACAATATATTAA
TGACGTTTGTCACAAATTCAAACCGCCCGTGCCATTTAGTGTAACAGGGA
CTTCTTTGGCATACTTCAAAAGATTCTACCTGAACACATCTGTGATGGAG
TTTCACCCACGTGAAATGGCCTTTTTATCAATCTATCTAGCTTGTAAAGT
TGACGAATACAATGTGTCTATCGATCAATTTATGGATCAAGTATGTAGTC
AACCGAATCCAAGCCTACAAATGTTTATCATTGATAATGAGCTTTTAATG
CTCCAGAAACTAAATTTCCACCTGACGGTGCATTGTCCATATAGACCACT
GGAGGGTTTCATGATCGACCTGAAGACAAACAAAGAACAGATCGGGATCG
ATGACCCAGAGATTTACAGACAAAAAACTGAACAATTTTTGATGAAATGT
TCGCTAACTGACGCAGTGCTTTTGTTCCCTCCCTCACAAATTGCTTTAGC
TGCTCTAAGTTATGGCATTGGAGAGAAATTTGATACTTATATTCGAAAGA
TTGCTGGAAAACAATCCATTGCAAAATTGGTTTCCAAAATTAAAGAGATT
CGCAATAACGTTATTAATTTTAAGTTCCCGAGTCGTGATGAAGTGAGTTT
TATTGAGGAGAAGTTGAAAGGTTGTCGTGATGGCGAGAACGATCCACATT
CTGACGAATACCACGCACGTGACAATGCACGAAAAGAAGCCAAAGAAATG
CAAAAGCGTAAGAAAATGGAGGAACTTTCAAACATTCAGCAAGCTGAAGA
ACGAATGCTTGCAACTGATATGTCAATCTCTGAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010312	XLOC_010312	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018386-protein	TCONS_00018386-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018386-exon-sc0000297-1575043694:166308..166751	TCONS_00018386-exon-sc0000297-1575043694:166308..166751	Clytia hemisphaerica	exon
TCONS_00018386-exon-sc0000297-1575043694:151301..152464	TCONS_00018386-exon-sc0000297-1575043694:151301..152464	Clytia hemisphaerica	exon
TCONS_00018386-exon-sc0000297-1510915933:166308..166751	TCONS_00018386-exon-sc0000297-1510915933:166308..166751	Clytia hemisphaerica	exon
TCONS_00018386-exon-sc0000297-1510915933:151301..152464	TCONS_00018386-exon-sc0000297-1510915933:151301..152464	Clytia hemisphaerica	exon
TCONS_00018386-exon-sc0000297-1491911889:166308..166751	TCONS_00018386-exon-sc0000297-1491911889:166308..166751	Clytia hemisphaerica	exon
TCONS_00018386-exon-sc0000297-1491911889:151301..152464	TCONS_00018386-exon-sc0000297-1491911889:151301..152464	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000297	supercontig	sc0000297:151301..166751 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
119.276	115.311	60.4816	56.0724	17.2697	12.2816	13.2526	14.5294	10.7345	11.8385	11.6548	11.5422	10.1916	12.9502	10.3069	12.166	10.91	10.3936	6.79707	5.44436	12.1402	11.0023	58.5738	46.7805	15.6002	17.4145	6.25673	6.76507	25.4648	31.0726

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like
IPR031658	Cyclin_C_2
IPR006671	Cyclin_N
IPR027081	CyclinH/Ccl1

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0070985	TFIIK complex

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0070985	TFIIK complex
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity

Blast

[Close]

BLAST of TCONS_00018386 vs. Swiss-Prot (Human)
Match: CCNH (Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 3.809e-63
Identity = 119/292 (40.75%), Postives = 178/292 (60.96%), Query Frame = 1

Query:  451 MFHRSSQKKHWLFENSEVIAQAQSQSNQTYIEAATKRCKK--HNMSPSND--FLQYHEEKLLLIYYSQYINDVCHKFKPPVPFSVTGTSLAYFKRFYLNTSVMEFHPREMAFLSIYLACKVDEYNVSIDQFMDQVCSQPNPSLQMF--IIDNELLMLQKLNFHLTVHCPYRPLEGFMIDLKTNKEQIGIDDPEIYRQKTEQFLMKCSLTDAVLLFPPSQIALAAL---SYGIGEKFDTYIRKI----AGKQSIAKLVSKIKEIRNNVINFKFPSRDEVSFIEEKLKGCRDGE 1287
            M+H SSQK+HW F + E +A+ ++ +N+ +      RCK   +     ND  FL+ HEE  L  YY + + + C  FKP +P SV GT+  YFKRFYLN SVME+HPR +     +LACKVDE+NVS  QF+  +   P    +    I++ ELL++Q+LNFHL VH PYRP EGF+IDLKT      +++PEI R+  + FL + +LTDA LL+ PSQIAL A+   +   G   ++Y+ +       +  +++L+  +K +RN V  ++ P  +EV+ +++KL+ C   E
Sbjct:    1 MYHNSSQKRHWTFSSEEQLARLRADANRKF------RCKAVANGKVLPNDPVFLEPHEEMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYP--ILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAE 284

The following BLAST results are available for this feature:

BLAST of TCONS_00018386 vs. Swiss-Prot (Human)

BLAST of TCONS_00018386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCNH	3.809e-63	40.75	Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1	[more]

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TCONS_00018386 (transcript) - C. hemisphaerica