TCONS_00018412-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00018412-protein
Unique NameTCONS_00018412-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1179

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00018412-protein ID=TCONS_00018412-protein|Name=TCONS_00018412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1179bp
MEMRFHFHVLMQTILLLLQSFQNSMMVQTSRALFYLPQHMDMLTVRNHGN
SSMMVNVGESLNAMLNASMTENVEDFGLSFLNKKNANIVSELKKFEGKMM
YRFDKNLCKFRDSNKPESCYPQYREALDGIYHYFRFSKSIIIHTMSPCDA
QILQTLNKTFESRSSSTIQEAVVNLDSLTQDISKLVYQIKVSGVDLVISL
LEPSLTEMVLEAASRYELLDYSLIWITLSLHQHIAHVQTKQLPWQWIDFR
LEEANMETESIKQSVEETERTLQNTTFENTSDILEMEFPRCDESKQKISI
YARNSSTDDVITWGLISEWTSQRGIHVYPNANLLVRMIRIKTSLTTLRIA
TVLDDPFASYAPHLYNPNKGGSCDQGLICRTAAKGYPSDHPDKWENKCCV
GMAIDLIELISEELYFTPDLYIVEDGFYGGKDKNTSEWNGLVRDVQLHKA
DIAIAALTATADRLKIVDFCEPFLLTDLGIMISTIHDQLDFINWEFLAPL
STRLRVWILVTFIIGVYLIYILENQHLVLQRIIDKGVFPRYQWREGFSYF
SGLTFQRDLGGKNPQRAGARVTAVAFAFGMVIIMTTYTAVLTASKVSQST
SNPFHGFDDERVRNPSSDFKFGTVSHTSMESFFKNSRDDIHQRMFRFMLN
YNVNQSLEGIDMVRKGKLNAFIHETPFLTYHASKQSDCSLKIFGNLNQGG
YAFSVPKNSVWKHLLSQAVLKLKEQETIEDLYKKWFPFSCANNGTSSEYE
PVQINYFGGLFFILLLVLILSLFLLGGEHFCYRHHRRVINPIQDKVQVWR
ETKATERRNAIINPDDISRLQQLHQNGMLGQKDPVESAESSSEGDISEGE
EELIRMRLGRRNVTRTSVASSVQRTSLDSLGQYFATDAAQRRRGSRLDLT
SIKKSSNFDMGLSTTLELSEISNISEANNEDCESLRSSSASSLCSNATLP
NINPKESSRDINNQSDVEEKEDITTKQNTEQIPSPETENSSLELSNSETK
LIPNGVPIIVLPNNKEKNVITKPKHQTNGHVTIEIVHDENILQDSGTVIA
NGHTYQLNSTDDDKVPQQWNGFANGSVHEDSFDEKTNINEYSKSKEIKHS
SDKRSFGKKKISNGIIKTRDFSIVDIPESVLPYNNFFENNNVVGGITTSS
EIDLKKEKQINHRKARRRTLPIIQTSSFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010329XLOC_010329Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00018412TCONS_00018412Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019594Glu/Gly-bd
IPR001320Iontro_rcpt
Vocabulary: Molecular Function
TermDefinition
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 251..271
NoneNo IPR availableGENE3D3.40.190.10coord: 343..503
e-value: 6.9E-21
score: 73.8
NoneNo IPR availableGENE3D3.40.50.2300coord: 120..335
e-value: 5.8E-7
score: 28.7
NoneNo IPR availableGENE3D3.40.190.10coord: 587..701
e-value: 9.8E-21
score: 73.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 946..996
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 830..851
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 392..485
coord: 601..739
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 391..447
e-value: 3.9E-10
score: 49.7
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 394..483
e-value: 9.5E-22
score: 77.3
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 376..738
e-value: 4.2E-37
score: 139.2
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 505..766
e-value: 8.0E-9
score: 35.4

Blast
[Close]
BLAST of TCONS_00018412-protein vs. Swiss-Prot (Human)
Match: NMDE4 (Glutamate receptor ionotropic, NMDA 2D OS=Homo sapiens GN=GRIN2D PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.626e-48
Identity = 139/507 (27.42%), Postives = 231/507 (45.56%), Query Frame = 0 
Query:  312 TWGLISEWTSQRGIHVYPNANLLVRMIRIKTSLTTLRIATVLDDPFASYAPHLYNPNKGGSCDQGLICRTAAKGYPSDHPD--KWENKCCVGMAIDLIELISEELYFTPDLYIVEDGFYGGKDKNTSEWNGLVRDVQLHKADIAIAALTATADRLKIVDFCEPFLLTDLGIMISTIHDQLDFINWEFLAPLSTRLRVWIL----------VTFIIGVYLIYILENQHLVLQRIIDKGVFPRYQWREGFSYFS---------GLTFQRDLGGKNPQRAGARVTAVAFAFGMVIIMTTYTAVLTASKVSQSTSNPFHGFDDERVRNPSSDF---KFGTVSHTSMESFFKNSRDDIHQRMFRFMLNYNVNQSLEGIDMVRKGKLNAFIHETPFLTYHASKQSDCSLKIFGN---LNQGGYAFSVPKNSVWKHLLSQAVLKLKEQETIEDLYKKWFPFSCANNGTSSEYEPVQINYFGGLFFILLLVLILSLFLLGGEHFCYRHHRRVINP 791
            TW ++  W  Q     YP  +   R ++       L +AT+ + PF    P   +P  G      + CR+      S  PD  + E +CC G  ID+++ ++  + F+ DLY+V +G +G K      WNG++ +V   +AD+AI +LT   +R +IVDF  PF+ T + +M++  +  +      FL P S    VW++          VT  I  YL  +  N+ L   +            R G S F+          L F   +  +NP+   +++  + +AF  VI + +YTA L A  + +   +   G  D + + P   +   KFGTV + S E   +++  D+H     +M+ YN  +  E +  ++ GKL+AFI++   L Y A K   C L   G+       GY  ++ K S WK  +  A+L+    + IE L + W    C N+        + I+   G+F++LL+ + LSL +   EH  Y   R  + P
Sbjct:  397 TWEVVGSWEQQTLRLKYPLWSRYGRFLQPVDDTQHLTVATLEERPFVIVEPA--DPISGTCIRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGV--WNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMVARSNGTVSPS--AFLEPYSPA--VWVMMFVMCLTVVAVTVFIFEYLSPVGYNRSLATGK------------RPGGSTFTIGKSIWLLWALVFNNSVPVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYVDTVSGLSDRKFQRPQEQYPPLKFGTVPNGSTEKNIRSNYPDMHS----YMVRYNQPRVEEALTQLKAGKLDAFIYDAAVLNYMARKDEGCKLVTIGSGKVFATTGYGIALHKGSRWKRPIDLALLQFLGDDEIEMLERLWLSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWRLRHCLGP 879
The following BLAST results are available for this feature:
BLAST of TCONS_00018412-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDE41.626e-4827.42Glutamate receptor ionotropic, NMDA 2D OS=Homo sap... [more]
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