TCONS_00018723-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018723-protein
Unique Name	TCONS_00018723-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	792

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018723-protein ID=TCONS_00018723-protein|Name=TCONS_00018723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=792bp
MLLYFLLLNILPSTMANEPIDWEILGLFTMTNCQPGFEHHCLDAQWTAES
FLVERENKEGYDEETVKKRFRSKYFCIIDMKDSMEAVNNFALPFIEHPVT
NTSGMCSHGNASTIYHRKTTLIFTYMSHEITRSLGYLLLNEEIPLLAATW
KQMYPNHLLEHPLYVFSHESSFLVDTQFESTYRVLKSINVTYSAIFYMRE
YKQDDEISKRNCTERKNSAFCYLSSFKEGEEGKQCIKEIFVDYKNETKMN
ATVALVKSYKNLRNIYIYGLSTSYFELEKTHPVFKDFSTPEAKNDFFLTP
FTRPFNNETATYQSLESSIERNKHYKSFQNVPGGRLLWELLWFATQFQYI
FIQGDPEVLQGLGHIMPMFKGITTDEWLNIDIGVREILMRRIASNRETMK
VLLKILKADSYFKEREVKDWETTYYFNPVRQMNKSEPFCNLTKPQCGKGE
ELIHGFYEEQKWLNSLGWFCQKCQKGFYKEVEGNDKCGECFGFYETNFER
TTCFDPYQDQYIKMDQLDVVLISSLVYILILLIIFTMIIFVKLRETPIVK
NANRMATYFQLSAHLILAAVPQIVFTEKPSALKCCFRPIIVGLCLTAVVS
VNLAKTQKLNVIFRLKTRLSGKKKKAIGLLEWLIIAFLIFVDILILIWNY
SFNPAEVIEVHHVETKLKDITCQNNASVVIQLFFVLLLVLANGVQAFRAR
KLPSHFTETTHVIYSSFTTVLLIAASTGIYFAQKSFNVKDRVLWISIHLL
NALNFLLIYIYKMFVMLFKPEQNTSQAFNKKRTERINSKFQH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010477	XLOC_010477	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018723	TCONS_00018723	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR017978	GPCR_3_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 684..707 score: 34.11 coord: 546..568 score: 30.84 coord: 592..613 score: 30.26
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 530..764 e-value: 3.3E-25 score: 89.2
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 518..782 score: 22.155

Blast

[Close]

BLAST of TCONS_00018723-protein vs. Swiss-Prot (Human)
Match: GRM1 (Metabotropic glutamate receptor 1 OS=Homo sapiens GN=GRM1 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 9.346e-24
Identity = 89/359 (24.79%), Postives = 171/359 (47.63%), Query Frame = 0

Query:  431 QMNKSEPFCNLTKPQCGKGEELIHGFYEEQKWLNSLGWFCQKCQKGFYKEVEGNDKCGECFGFYETNFERTTCFDPYQDQYIKMDQLDVVLISSLVYILILLIIFTMIIFVKLRETPIVKNANRMATYFQLSAHLILAAVPQIVFTEKPSALKCCFRPIIVGLCLTAVVSVNLAKTQKL-NVIFRLKTRLSGKKKKAIGLLEWLIIA-FLIFVDILILIWNYSFNPAEVIEVHHVETKLKDITCQNNASVVIQLFFVLLLVLANGVQAFRARKLPSHFTETTHVIYSSFTTVLLIAASTGIYFAQKSFNVKDRVLWISIHLLNALNFLLIYIYKMFVMLFKPEQNTSQAFNKKRTERIN 787
            QMNKS    ++    C KG+  +      +K   S  W C  C++  Y  V+    C  C   +  N + T C +P   +Y++   ++ ++  +   + IL+ +F  +IFV  R+TP+VK+++R   Y  L A + L  V       KP+   C  + ++VGL      S  + KT ++  ++   K ++  +K + +     +IIA  LI V + +++      P   I  +    ++  I   +N  VV  L +  LL+++    AF+ R +P++F E  ++ ++ +TT ++  A   IYF   ++ +      +S+ +  AL  +  +  KM++++ KPE+N   AF      R++
Sbjct:  513 QMNKSGVVRSVCSEPCLKGQIKVI-----RKGEVSCCWICTACKENEY--VQDEFTCKACDLGWWPNADLTGC-EPIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYRDTPVVKSSSRELCYIIL-AGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGS-NYKIITTCFAVSLSVTVALGCM--FTPKMYIIIAKPERNVRSAFTTSDVVRMH 859

The following BLAST results are available for this feature:

BLAST of TCONS_00018723-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018723-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM1	9.346e-24	24.79	Metabotropic glutamate receptor 1 OS=Homo sapiens ...	[more]

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TCONS_00018723-protein (polypeptide) - C. hemisphaerica