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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018723 ID=TCONS_00018723|Name=TCONS_00018723|organism=Clytia hemisphaerica|type=transcript|length=2500bpRun BLAST on NCBI protein sequence of TCONS_00018723-protein >TCONS_00018723-protein ID=TCONS_00018723-protein|Name=TCONS_00018723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=792bp MLLYFLLLNILPSTMANEPIDWEILGLFTMTNCQPGFEHHCLDAQWTAESRun BLAST on NCBI transcript from alignment at sc0000305:117893..133496+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018723 ID=TCONS_00018723|Name=TCONS_00018723|organism=Clytia hemisphaerica|type=transcript|length=15604bp|location=Sequence derived from alignment at sc0000305:117893..133496+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000305:117893..133496+ >TCONS_00018723 ID=TCONS_00018723|Name=TCONS_00018723|organism=Clytia hemisphaerica|type=CDS|length=23790bp|location=Sequence derived from alignment at sc0000305:117893..133496+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018723 vs. Swiss-Prot (Human)
Match: GRM1 (Metabotropic glutamate receptor 1 OS=Homo sapiens GN=GRM1 PE=1 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 8.415e-16 Identity = 89/359 (24.79%), Postives = 171/359 (47.63%), Query Frame = 1
Query: 1291 QMNKSEPFCNLTKPQCGKGEELIHGFYEEQKWLNSLGWFCQKCQKGFYKEVEGNDKCGECFGFYETNFERTTCFDPYQDQYIKMDQLDXXXXXXXXXXXXXXXXXXXXXXVKLRETPIVKNANRMATYFQLSAHLILAAVPQIVFTEKPSALKCCFRPIIVGLCLTAVVSVNLAKTQKL-NVIFRLKTRLSGKKKKAIGLLEWLIIA-FLIFVDILILIWNYSFNPAEVIEVHHVETKLKDITCQNNASVVIQXXXXXXXXXANGVQAFRARKLPSHFTETTHVIYSSFTTVLLIAASTGIYFAQKSFNVKDRVLWISIHLLNALNFLLIYIYKMFVMLFKPEQNTSQAFNKKRTERIN 2361
QMNKS ++ C KG+ + +K S W C C++ Y V+ C C + N + T C +P +Y++ ++ ++ + + IL+ +F +IFV R+TP+VK+++R Y L A + L V KP+ C + ++VGL S + KT ++ ++ K ++ +K + + +IIA LI V + +++ P I + ++ I +N VV L + LL+++ AF+ R +P++F E ++ ++ +TT ++ A IYF ++ + +S+ + AL + + KM++++ KPE+N AF R++
Sbjct: 513 QMNKSGVVRSVCSEPCLKGQIKVI-----RKGEVSCCWICTACKENEY--VQDEFTCKACDLGWWPNADLTGC-EPIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYRDTPVVKSSSRELCYIIL-AGIFLGYVCPFTLIAKPTTTSCYLQRLLVGLSSAMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVIIASILISVQLTLVVTLIIMEPPMPILSYPSIKEVYLICNTSNLGVVAPLGYNGLLIMSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGS-NYKIITTCFAVSLSVTVALGCM--FTPKMYIIIAKPERNVRSAFTTSDVVRMH 859 The following BLAST results are available for this feature:
BLAST of TCONS_00018723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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