TCONS_00018773-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00018773-protein
Unique Name	TCONS_00018773-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	390

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00018773-protein ID=TCONS_00018773-protein|Name=TCONS_00018773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MTGVDVKRFLQKWDDSSKQSRVEILQDFNKKHCNKTAPELDQLLGNCASL
FFTRITAWLRLSYMNGSYLDVQLKTLNVFLSASSGQKFLSEFIEVGGILT
LLEIIGLPKISEVHKELTLKLLNNIASTGRKYKELVCECYGVRAVCECLG
KSQTLGCQEACRLIIINLSNGNPRYLQQLYKAMIILLKSASPEAQRIAAQ
ALQKIQPSLDTASLNIVDPTLMLLSSLHIEVQYEGCVLVTMLIQYHSIRQ
DILVGLVALLKPSQMELLEQSDVVSAQVPVFIQQAVAAKLIGVLSKEDFD
IARNFLELDCITSLLFAMSNEKYADSQKQAGITLQYFIHTFQEVELGVRE
AIGQSFFFEYMNDPSDFYLKMTSVQIDILKGSKVKIHQSS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010513	XLOC_010513	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00018773	TCONS_00018773	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 12..375 e-value: 3.6E-18 score: 64.7
None	No IPR available	CDD	cd00020	ARM	coord: 91..202 e-value: 0.00178934 score: 35.7532
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 64..364

Blast

[Close]

BLAST of TCONS_00018773-protein vs. Swiss-Prot (Human)
Match: CA228 (Uncharacterized protein C1orf228 OS=Homo sapiens GN=C1orf228 PE=2 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 8.880e-101
Identity = 166/390 (42.56%), Postives = 253/390 (64.87%), Query Frame = 0

Query:    9 FLQKWDDSSKQSRVEILQDFNKKHCNKTAPELDQLLGNCASLFFTRITAWLRLSYMNGSYLDVQLKTLNVFLSASSGQKFLSEFIEVGGILTLLEIIGLPKISEVHKELTLKLLNNIASTGRKYKELVCECYGVRAVCECLGKSQTLGCQEACRLIIINLSNGNPRYLQQLYKAMIILLKSASPEAQRIAAQALQKIQPSLDTASLNIVDPTLMLLSSLHIEVQYEGCVLVTMLIQYHSIRQDILVGLVALLKPS-------QMELLEQSDV--VSAQVPVFIQQAVAAKLIGVLSKEDFDIARNFLELDCITSLLFAMSNEKYADSQKQAGITLQYFIHTFQEVELGVREAIGQSFFFEYMNDPSDFYLKMTSVQIDILKGSKVKIHQS 389
            FLQ+WD++ K +R  IL  F + +  KTAPEL+Q     ASLF  R+T  LR++YM  S L+  L+++ +FLSA S  ++L EF+EVGG+LTLLEI+GL KI E  K+ ++KLL  IA++GR YKEL+CE YGVR++ E L KS++   QE  ++++ +L +GNP+Y  Q+YK +I LL   SP+AQ+++ Q L+  QP + T   +IVD  L +L ++H+EVQYE   L+  L+ Y  +RQ +L GLVALL PS       Q ++L    V  ++  +P+F+QQA AAK IGVL++ D  IA   L L  +  L+ AM N  +++SQ+ A +TL+ F+  F  V   VR+ +G+  +  ++++  D Y+K+ S+Q DIL  + V + ++
Sbjct:   16 FLQEWDNAGKVARSHILDKFIETNQGKTAPELEQEFSQGASLFLVRLTTSLRITYMTDSCLEKLLRSIGIFLSAVSSNRYLIEFLEVGGVLTLLEILGLEKIKEEAKKESVKLLQVIANSGRTYKELICESYGVRSIAEFLAKSKSEETQEEVQVLLDSLVHGNPKYQNQVYKGLIALLPCESPKAQQLSLQTLRTAQPIIGTTHPSIVDCVLKVLGTMHLEVQYEAIELIKDLVGY-DVRQALLKGLVALLIPSVKEISKLQAKILSDPSVLQLTPSLPMFLQQAAAAKAIGVLARNDMSIAEELLYLRVVRGLMAAMGNTDHSNSQRLASLTLECFVQMFPLVAEHVRKCMGEELYQLFLSNAEDLYMKIDSIQADILAANTVNVTKA 404

The following BLAST results are available for this feature:

BLAST of TCONS_00018773-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00018773-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CA228	8.880e-101	42.56	Uncharacterized protein C1orf228 OS=Homo sapiens G...	[more]

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TCONS_00018773-protein (polypeptide) - C. hemisphaerica