TCONS_00019172-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019172-protein
Unique NameTCONS_00019172-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019172-protein ID=TCONS_00019172-protein|Name=TCONS_00019172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
FTFNSSISKHTTLQTFAILSLVLMCTKTMMANDKSPFSIDWILRKESGLD
RVDKIKNVIRVYEQANPFRYPSCYKDLSLVKYKLDKCCPPSRQNPLHTLQ
RSRSPVSPAKSHTTISSISKPPSPLHSSCTCHTKVDIKDGGHVVEKSGYE
DHNMNSYDDVFVEERITMTSLNTKAKDLSRSLSTSSSNCSDLSAPSPRSD
EEGSETFAHGRRNRTIFTKKQASELERVFQTTHYPDLKCRHEISKVTKLS
ENRIQVWFQNRRAKWRRTEKTWGEGSVMAKYGLYGAMVRHSLKTRKSENE
TS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010760XLOC_010760Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019172TCONS_00019172Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR023339CVC
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 210..272
e-value: 3.6E-22
score: 89.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 211..267
e-value: 9.4E-21
score: 73.3
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 208..268
score: 19.435
NoneNo IPR availableGENE3D1.10.10.60coord: 140..271
e-value: 1.7E-25
score: 88.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..121
NoneNo IPR availableCDDcd00086homeodomaincoord: 211..269
e-value: 1.70822E-20
score: 81.906
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 243..266
IPR023339CVC domainPROSITEPS51496CVCcoord: 270..302
score: 11.059
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 187..270

Blast
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BLAST of TCONS_00019172-protein vs. Swiss-Prot (Human)
Match: VSX1 (Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.568e-31
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0 
Query:  211 RRNRTIFTKKQASELERVFQTTHYPDLKCRHEISKVTKLSENRIQVWFQNRRAKWRRTEKTWGEGSVMAKYGLYGAMVRHSL 292
            RR+RT+FT  Q  ELE+ F   HYPD+  R  ++  T+L E+RIQVWFQNRRAKWR+ EK WG  SVMA+YGLYGAMVRH +
Sbjct:  165 RRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCI 246
The following BLAST results are available for this feature:
BLAST of TCONS_00019172-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VSX12.568e-3162.20Visual system homeobox 1 OS=Homo sapiens GN=VSX1 P... [more]
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