TCONS_00019240-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019240-protein
Unique NameTCONS_00019240-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019240-protein ID=TCONS_00019240-protein|Name=TCONS_00019240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp
MKMTGSFRDFFKQVYILLWKNFRLRRRQIFRNVVEIVWPLAIFIILAAVR
KKRLPEKMPLEHAGFEGAIHYNPRALPSAGALPFLQSLYCNYRVDEMLEE
PQELPQFTSSIGYQLLNDLQAFASNQTQVDMFNRLQNNVTQLLPELSAVF
NDLNVSGLLVNGSFNTDITLQTLLGNDAQEFLDFLVNTTNVPLNTSEALI
QSRINVTGSVELVEEFFPNLTISSIPELLQKLQEISNETCTNKRINNILI
FPDGSDPNTLTGLICNPVFDFQVFEELSTLSSRNMSSIRRTIQAIEDIQE
RLNRIIPEAQDAFSEIQQLEGYDSIQKIFQDLQNISRDYSFTYNNVSVME
FSYVICGGVPNMTQFLNTTTQKLPQSKSPSTAPLNMSTNGPTHTTTTATT
TTQKPMTTTTKRSTTANDLNDASTTTPGKITFKPTNPFTSSTKGKETCSS
IDPSDRVDCGWGGISANECRKQGCCYDSTIPKAKYCFCATSKIYTPILKS
IILHKCSRNEKQKPQRCR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010797XLOC_010797Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019240TCONS_00019240Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017994P_trefoil_chordata
IPR000519P_trefoil_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017994P-type trefoil, chordataPRINTSPR00680PTREFOILcoord: 453..465
score: 44.51
coord: 465..477
score: 42.86
coord: 477..489
score: 36.81
IPR000519P-type trefoil domainSMARTSM00018P_2coord: 446..493
e-value: 8.1E-12
score: 55.3
IPR000519P-type trefoil domainPFAMPF00088Trefoilcoord: 448..487
e-value: 1.5E-9
score: 37.5
IPR000519P-type trefoil domainPROSITEPS51448P_TREFOIL_2coord: 446..490
score: 15.42
IPR000519P-type trefoil domainCDDcd00111Trefoilcoord: 446..487
e-value: 1.07743E-12
score: 61.9761
NoneNo IPR availableGENE3D4.10.110.10coord: 441..496
e-value: 1.9E-11
score: 43.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 370..429
NoneNo IPR availableSUPERFAMILY57492Trefoilcoord: 446..490

Blast
[Close]
BLAST of TCONS_00019240-protein vs. Swiss-Prot (Human)
Match: ABCA4 (Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.990e-16
Identity = 80/321 (24.92%), Postives = 136/321 (42.37%), Query Frame = 0 
Query:   10 FFKQVYILLWKNFRLRRRQIFRNVVEIVWPLAIFIILAAVRKKRLPEKMPLEHAGFEGAIHYNPRALPSAGALPFLQSLYCN-----YRVDEMLEEPQELPQFTSSIGYQLLNDLQAFASNQTQVDMFNRLQNNVTQLLPELSAVFNDLNVSGLLVNGSFNTDITLQTLLGNDAQEFLDFLVNTTNVPLNTSEALIQSRINVTGSVELVEEFFPNLTISSIPELLQKLQEISNETCTNKRINNILIFPDGSDPNTLTGLICNPVFDFQVFEELSTLSSRNMSSIRRTIQAIEDIQERLNRIIPEAQDAFSEIQQLEGYDSI 325
            F +Q+ +LLWKN+ LR+RQ  R VVE+VWPL++F++L  +R        PL         H+  +A+PSAG LP+LQ ++CN     ++     E P  +  + +SI  ++  D Q    N  +     R+       L  LS   + L      + G     I ++ +L  D +    FL+    +  +    LI S++             P      +P+L   L++I+   C+   +   +IF       T+   +C             +LS   +  I  T+ A  D   +L R++P   D+ S+   L  +  I
Sbjct:    3 FVRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNAN-----PLYS---HHECHFPNKAMPSAGMLPWLQGIFCNVNNPCFQSPTPGESPGIVSNYNNSILARVYRDFQELLMNAPESQHLGRIWTE----LHILSQFMDTLRTHPERIAGR---GIRIRDIL-KDEETLTLFLIKNIGLSDSVVYLLINSQVR------------PEQFAHGVPDL--ALKDIA---CSEALLERFIIFSQRRGAKTVRYALC-------------SLSQGTLQWIEDTLYANVDF-FKLFRVLPTLLDSRSQGINLRSWGGI 276
The following BLAST results are available for this feature:
BLAST of TCONS_00019240-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCA41.990e-1624.92Retinal-specific ATP-binding cassette transporter ... [more]
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