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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019240 ID=TCONS_00019240|Name=TCONS_00019240|organism=Clytia hemisphaerica|type=transcript|length=1644bpRun BLAST on NCBI protein sequence of TCONS_00019240-protein >TCONS_00019240-protein ID=TCONS_00019240-protein|Name=TCONS_00019240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp MKMTGSFRDFFKQVYILLWKNFRLRRRQIFRNVVEIVWPLAIFIILAAVRRun BLAST on NCBI transcript from alignment at sc0000321:78726..89992- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019240 ID=TCONS_00019240|Name=TCONS_00019240|organism=Clytia hemisphaerica|type=transcript|length=11267bp|location=Sequence derived from alignment at sc0000321:78726..89992- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000321:78726..89992- >TCONS_00019240 ID=TCONS_00019240|Name=TCONS_00019240|organism=Clytia hemisphaerica|type=CDS|length=17127bp|location=Sequence derived from alignment at sc0000321:78726..89992- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019240 vs. Swiss-Prot (Human)
Match: ABCA4 (Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 3.252e-16 Identity = 80/321 (24.92%), Postives = 136/321 (42.37%), Query Frame = 1
Query: 97 FFKQVYILLWKNFRLRRRQIFRNVVEIVWPLAIFIILAAVRKKRLPEKMPLEHAGFEGAIHYNPRALPSAGALPFLQSLYCN-----YRVDEMLEEPQELPQFTSSIGYQLLNDLQAFASNQTQVDMFNRLQNNVTQLLPELSAVFNDLNVSGLLVNGSFNTDITLQTLLGNDAQEFLDFLVNTTNVPLNTSEALIQSRINVTGSVELVEEFFPNLTISSIPELLQKLQEISNETCTNKRINNILIFPDGSDPNTLTGLICNPVFDFQVFEELSTLSSRNMSSIRRTIQAIEDIQERLNRIIPEAQDAFSEIQQLEGYDSI 1044
F +Q+ +LLWKN+ LR+RQ R VVE+VWPL++F++L +R PL H+ +A+PSAG LP+LQ ++CN ++ E P + + +SI ++ D Q N + R+ L LS + L + G I ++ +L D + FL+ + + LI S++ P +P+L L++I+ C+ + +IF T+ +C +LS + I T+ A D +L R++P D+ S+ L + I
Sbjct: 3 FVRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNAN-----PLYS---HHECHFPNKAMPSAGMLPWLQGIFCNVNNPCFQSPTPGESPGIVSNYNNSILARVYRDFQELLMNAPESQHLGRIWTE----LHILSQFMDTLRTHPERIAGR---GIRIRDIL-KDEETLTLFLIKNIGLSDSVVYLLINSQVR------------PEQFAHGVPDL--ALKDIA---CSEALLERFIIFSQRRGAKTVRYALC-------------SLSQGTLQWIEDTLYANVDF-FKLFRVLPTLLDSRSQGINLRSWGGI 276 The following BLAST results are available for this feature:
BLAST of TCONS_00019240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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