TCONS_00019285-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019285-protein
Unique NameTCONS_00019285-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019285-protein ID=TCONS_00019285-protein|Name=TCONS_00019285-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MNRGMNRRQMEDKCWKCFGMIQGEKVRYQEKQFCTRCYQCDGCKLSLKNK
TCHEEGGQLYCKDCWNIIQQDKCYKCKTLIKVNGQKYRGKLYHEECFTCS
ACNCSLVGLKFHEDEGRYYCEGKCYQDLGAYVCNGCGMQIDGNDIEYMLF
QGKYYHNRCFVCDGCRAPLIGQKFKISQGQRFCTRCR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010825XLOC_010825Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019285TCONS_00019285Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 13..64
e-value: 1.0E-8
score: 45.0
coord: 72..123
e-value: 8.4E-11
score: 51.9
coord: 132..186
e-value: 1.5E-9
score: 47.7
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 133..186
e-value: 7.0E-9
score: 35.7
coord: 73..127
e-value: 4.9E-9
score: 36.2
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 133..169
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 73..106
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 132..187
score: 9.148
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 71..131
score: 11.771
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 12..70
score: 7.989
NoneNo IPR availableGENE3D2.10.110.10coord: 70..127
e-value: 2.8E-13
score: 49.3
NoneNo IPR availableGENE3D2.10.110.10coord: 5..68
e-value: 3.0E-10
score: 39.4
NoneNo IPR availableGENE3D2.10.110.10coord: 128..187
e-value: 4.2E-12
score: 45.3
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 39..103
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 99..165

Blast
[Close]
BLAST of TCONS_00019285-protein vs. Swiss-Prot (Human)
Match: LDB3 (LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.388e-20
Identity = 49/172 (28.49%), Postives = 78/172 (45.35%), Query Frame = 0 
Query:   14 CWKCFGMIQGEKVRYQEKQFCTRCYQCDGCKLSLKNKTCHEEGGQLYCKDCWNIIQQDKCYKCKTLIKVNGQKYRGKLYHEECFTCSACNCSLVGLKFHEDEGRYYCEGKCYQDLGAYVCNGCGMQIDGNDIEYMLFQGKYYHNRCFVCDGCRAPLIGQKFKISQGQRFCTR 185
            C  C  +I+G  +    + +    + C  CK SL +    EE   +YC+ C+       C KC T I         + +H  CF C+AC        FH ++G  YCE K Y +L +  C+GC   ++  D +++   G  +H+ CF+C  C   L GQ F   + +  C +
Sbjct:  551 CGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCE-KDYINLFSTKCHGCDFPVEAGD-KFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDRPLCKK 720
The following BLAST results are available for this feature:
BLAST of TCONS_00019285-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDB31.388e-2028.49LIM domain-binding protein 3 OS=Homo sapiens GN=LD... [more]
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