TCONS_00019563-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019563-protein
Unique Name	TCONS_00019563-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	399

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019563-protein ID=TCONS_00019563-protein|Name=TCONS_00019563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MDGVHFMDDPAVEHHDEGVEEMQQEMPEMPMNPGEFNEIRMILNDPLRHT
ITTSVAFDTHEQLFWAGTQSGHITSYYGSSLQKYTAFQAHHSEIRKILPD
IHGVLSLCPDEVRYTTKQGLKIYSARDEGMTSMRSMVRGNGAADNYVLIA
GENEHFYELDLTSGYVYQKSEVACEPNTVVVKQSNHYLCCGQKTGQVVLH
DPQSLEVCHKLEAHSGSLSDFDFNGNLLVTTGFSKRYNHLIVDPYLMVYD
LRTLRAFPPVQMPIEPYFVRFLPTYTLRCLVLSLSGQFVICQPESLVVDP
GLYQLNNQGSIMDVCISDTYQCLGIGDDAGFVHLWADRDEEQVTFNHQSQ
ETVFPDELQHFDAFDIDDWSISLSKIPMPQCSEPLLSDWPEHLTKRNDR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010997	XLOC_010997	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019563	TCONS_00019563	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 43..373 e-value: 5.9E-21 score: 74.1
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 53..341

Blast

[Close]

BLAST of TCONS_00019563-protein vs. Swiss-Prot (Human)
Match: PAN2 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens GN=PAN2 PE=1 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 3.073e-65
Identity = 129/339 (38.05%), Postives = 192/339 (56.64%), Query Frame = 0

Query:   57 FDTHEQLFWAGTQSGHITSYYGSSLQKYTAFQAHHSE-IRKILPDIHGVLSLCPDEVRYTTKQGLKIYSARDEGMTSMRSMVRGNGAADNYVLIAGENEHFYELDLTSGYVYQKSEVACEPNTVVVKQSNHYLCCGQKTGQVVLHDPQSLEVCHKLEAHSGSLSDFDFNGNLLVTTGFSKRYNHLIVDPYLMVYDLRTLRAFPPVQMPIEPYFVRFLPTYTLRCLVLSLSGQFVICQPESLVVDPGLYQLNNQGS-IMDVCISDTYQCLGIGDDAGFVHLWADRDEEQVTFNHQSQETVFPDELQHFDAFDIDDWS---ISLSKIPMPQCSEPLLSDWP 390
            FD HE++ W G+  GH TS++G +L++Y++FQ + S+ IR+I    +G+L L  + ++Y  + GL I+   D  +     M        + +L+ G   H  E+DL +    QK  V   P   +++Q+N +  CG  +G+V L D ++ +V H+ +A SGSLSDFD +GNLL   GFS R   L  D +L VYDLR +RA  P+Q+ ++P F+RF+PTYT R  ++S SGQ   C+P  L     ++ +N  G  +M   +S + Q L  GD  G VHLW D  E   +FN  S+ET F       D+    DWS   + LS IP+P  ++ LLSDWP
Sbjct:   81 FDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIRQIQSLENGILFLTKNNLKYMARGGLIIF---DYLLDENEDMHSLLLTDSSTLLVGGLQNHIIEIDLNTVQETQKYAVET-PGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLSDFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRLAIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDSPEP--SFNPYSRETEFALPCL-VDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWP 412

The following BLAST results are available for this feature:

BLAST of TCONS_00019563-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019563-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PAN2	3.073e-65	38.05	PAN2-PAN3 deadenylation complex catalytic subunit ...	[more]

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TCONS_00019563-protein (polypeptide) - C. hemisphaerica