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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019563 ID=TCONS_00019563|Name=TCONS_00019563|organism=Clytia hemisphaerica|type=transcript|length=1463bpRun BLAST on NCBI protein sequence of TCONS_00019563-protein >TCONS_00019563-protein ID=TCONS_00019563-protein|Name=TCONS_00019563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp MDGVHFMDDPAVEHHDEGVEEMQQEMPEMPMNPGEFNEIRMILNDPLRHTRun BLAST on NCBI transcript from alignment at sc0000331:89873..101035+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019563 ID=TCONS_00019563|Name=TCONS_00019563|organism=Clytia hemisphaerica|type=transcript|length=11163bp|location=Sequence derived from alignment at sc0000331:89873..101035+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000331:89873..101035+ >TCONS_00019563 ID=TCONS_00019563|Name=TCONS_00019563|organism=Clytia hemisphaerica|type=CDS|length=13167bp|location=Sequence derived from alignment at sc0000331:89873..101035+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019563 vs. Swiss-Prot (Human)
Match: PAN2 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens GN=PAN2 PE=1 SV=3) HSP 1 Score: 225.328 bits (573), Expect = 1.471e-63 Identity = 129/339 (38.05%), Postives = 192/339 (56.64%), Query Frame = 1
Query: 433 FDTHEQLFWAGTQSGHITSYYGSSLQKYTAFQAHHSE-IRKILPDIHGVLSLCPDEVRYTTKQGLKIYSARDEGMTSMRSMVRGNGAADNYVLIAGENEHFYELDLTSGYVYQKSEVACEPNTVVVKQSNHYLCCGQKTGQVVLHDPQSLEVCHKLEAHSGSLSDFDFNGNLLVTTGFSKRYNHLIVDPYLMVYDLRTLRAFPPVQMPIEPYFVRFLPTYTLRCLVLSLSGQFVICQPESLVVDPGLYQLNNQGS-IMDVCISDTYQCLGIGDDAGFVHLWADRDEEQVTFNHQSQETVFPDELQHFDAFDIDDWS---ISLSKIPMPQCSEPLLSDWP 1434
FD HE++ W G+ GH TS++G +L++Y++FQ + S+ IR+I +G+L L + ++Y + GL I+ D + M + +L+ G H E+DL + QK V P +++Q+N + CG +G+V L D ++ +V H+ +A SGSLSDFD +GNLL GFS R L D +L VYDLR +RA P+Q+ ++P F+RF+PTYT R ++S SGQ C+P L ++ +N G +M +S + Q L GD G VHLW D E +FN S+ET F D+ DWS + LS IP+P ++ LLSDWP
Sbjct: 81 FDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIRQIQSLENGILFLTKNNLKYMARGGLIIF---DYLLDENEDMHSLLLTDSSTLLVGGLQNHIIEIDLNTVQETQKYAVET-PGVTIMRQTNRFFFCGHTSGKVSLRDLRTFKVEHEFDAFSGSLSDFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRLAIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDSPEP--SFNPYSRETEFALPCL-VDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWP 412 The following BLAST results are available for this feature:
BLAST of TCONS_00019563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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