TCONS_00019565-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019565-protein
Unique Name	TCONS_00019565-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	788

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019565-protein ID=TCONS_00019565-protein|Name=TCONS_00019565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=788bp
MDGEYDKCPESPMSREQGNSVIPKMYRKVEIKYSKYGVEGFNFKHYNQTP
FSGLEIHIPNAYCNCMIQLMYFLEPLRVTICNHLCQEEFCLTCELSFLFH
MLDIADNQTCQATNFLRTFRTLPEVSALGLLKSDNYNPSRSGGMMQIIQN
WNRFVIRQLHQGTRLEPRKVTPKSTPKSTPKSTPKNTPKKNRPPRGSGGV
PEEYKGDEKKGEVEVPDEKAPNDAPSTEKLVESTENKDRVADFEEASGVK
SLFGMDLLSCRTCRCGDSEERKGTIFSLDLVYPDIKAYDEDEIYPFGQLL
QESVIRQERNPSWCNKCKKYQSTQHHRKVVSIPDVLNINCQLERDSNLKF
WKKQMQLASPKPSISSMKSNLHHSPPKICRYGKFCNRPECKFVHPGRDGE
PKLSSSDADGGLGANLSWLPLFIEVKHNKKTMGVEIKNYVHDEELAPEGQ
VYRLVSNVCHIKDNTMGTTLVSHILVSKRYHQRKEVEDQLEKSAEQWYVF
NDFAITPVSEVEAVSFNLDWKQPCVLMYARADLEEIHTAQCTSKIPSSVL
FADKSLALKQARFARSFTPLNASEILKADDVVGIDAEFVTLNQEESEMKS
DGTLSTLRPSQMSVARITVVRGWGPLEGVPFIDDYISTSEQVVDYLTKFS
GIKPGDLDVSSSSKHLTTLKTSYQKLRYLSDLKVILVGHGLKKDFRVINL
VIPRDQVIDTVELFHLNKQRYVSLKFLAWHFLNIKIQAGTHDSAEDAYTA
LKLYNKYKELLLAGEYVLQEELEILYETGRQYNWQVPE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_010998	XLOC_010998	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019565	TCONS_00019565	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013520	Exonuclease_RNaseT/DNA_pol3
IPR012337	RNaseH-like_dom
IPR028881	PAN2_dom
IPR028889	USP_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 580..763 e-value: 8.5E-22 score: 88.4
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 582..754 e-value: 1.6E-19 score: 70.9
None	No IPR available	GENE3D	3.90.70.10		coord: 45..533 e-value: 7.6E-41 score: 139.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..239
None	No IPR available	CDD	cd06143	PAN2_exo	coord: 582..754 e-value: 6.55341E-107 score: 326.11
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 247..369 coord: 51..164 coord: 448..536
IPR012337	Ribonuclease H-like domain	GENE3D	3.30.420.10		coord: 572..771 e-value: 2.3E-22 score: 79.0
IPR012337	Ribonuclease H-like domain	SUPERFAMILY	53098	Ribonuclease H-like	coord: 574..758
IPR028881	PAN2 domain	PFAM	PF13423	UCH_1	coord: 52..505 e-value: 8.1E-63 score: 212.7
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 52..531 score: 20.476

Blast

[Close]

BLAST of TCONS_00019565-protein vs. Swiss-Prot (Human)
Match: PAN2 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens GN=PAN2 PE=1 SV=3)

HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 354/805 (43.98%), Postives = 478/805 (59.38%), Query Frame = 0

Query:    2 DGEYD---KCPESPMSREQGNSV--IPKMYRKVEIKYSKYGVEGFNFKHYNQTPFSGLEIHIPNAYCNCMIQLMYFLEPLRVTICNHLCQEEFCLTCELSFLFHMLDIADNQTCQATNFLRTFRTLPEVSALGLLKSDNYNPSRSGGMMQIIQNWNRFVIRQLHQGTR-LEPRKVTPKSTPKSTPKSTPKNTPKKNRPPRGSGGVPEEYKGDEKKGEVEVPDEKAPNDAPSTEKLVESTENKDRVADFEEASGVKSLFGMDLLSCRTCRCGDSEERKGTIFSLDLVYPDIKAYDE-DEIYPFGQLLQESVIRQERNPSWCNKCKKYQSTQHHRKVVSIPDVLNINCQLERDSNLKFWKKQMQLASPKPSISSMKSNLHHSPPKICRYGKFCNRPECKFVHPGRDGEPKLSSSDADGGLGANLSWLPLFIEVKHNKKTMGVEIKNYVHDEEL------APEGQ---VYRLVSNVCHIKDNTMGTTLVSHILVSKRYHQRKEVEDQLEKSAEQWYVFNDFAITPVSEVEAVSFNLDWKQPCVLMYARADLEEIHTAQCTSKIPSSVLFADKSLALKQARFARSFTPLNASEILKADDVVGIDAEFVTLNQEESEMKSDGTLSTLRPSQMSVARITVVRGWGPLEGVPFIDDYISTSEQVVDYLTKFSGIKPGDLDVSSSSKHLTTLKTSYQKLRYLSDLKVILVGHGLKKDFRVINLVIPRDQVIDTVELFHLNKQRYVSLKFLAWHFLNIKIQAGTHDSAEDAYTALKLYNKYKELLLAGE--YVLQEELEILYETGRQYNWQVPE 788
            D E+D   +  ESP+ RE+   +  + K YRKV IKYSK G+E F+FKHYN+T F+GLE HIPNAYCNCMIQ++YFLEP+R  I NHLCQ+EFCL CEL FLFHMLD++    CQ  NFLR FRT+PE SALGL+ +D+   S  G + ++IQ WNRF++ QLHQ  + LE             P++            RG+GG      GD   G+                                       LF  ++ +C  CRCG    R  +     L YPD    D+  + Y F Q+L+ S+   +   +WC+ C+KYQ T   R +  +PD+L INC++       FW+ Q ++A  K ++      +  +        K    PE   V P  +    +              WLP  I +K  K   G+++ N+   +E+      A E     VY L++ V HI D+  G +LV+HI V + YHQRKE       + +QWY+FNDF I P+ + EAV F+++WK P +L Y + +L   +     + I +SVL A+ SLA KQ +   +F PL  +E+ +  D+VG+DAEFVTLN+EE+E++SDGT ST++PSQMSVARIT VRG GP EG+PFIDDYIST EQVVDYLT++SGIKPGDLD   SSKHLTTLK++Y KLR+L D+ V  VGHGL+KDFRVINL++P+DQV+DTV LFH+ ++R +SL+FLAW+FL++KIQ  THDS EDA TAL+LY KY EL   G       + L+ LYE GR+ +W+VPE
Sbjct:  462 DSEFDSFSQVTESPVGREEEPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADSDEASGKGNLARLIQRWNRFILTQLHQDMQELE------------IPQAY-----------RGAGGSSFCSSGDSVIGQ---------------------------------------LFSCEMENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCDTCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAF-KMAVKKHGGEISKNKEFALADWKELGSPEGVLVCPSIEELKNV--------------WLPFSIRMKMTKNK-GLDVCNWTDGDEMQWGPARAEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKE-----GVTHQQWYLFNDFLIEPIDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFIPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPE 1183

The following BLAST results are available for this feature:

BLAST of TCONS_00019565-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019565-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PAN2	0.000e+0	43.98	PAN2-PAN3 deadenylation complex catalytic subunit ...	[more]

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TCONS_00019565-protein (polypeptide) - C. hemisphaerica