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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019565 ID=TCONS_00019565|Name=TCONS_00019565|organism=Clytia hemisphaerica|type=transcript|length=2749bpRun BLAST on NCBI protein sequence of TCONS_00019565-protein >TCONS_00019565-protein ID=TCONS_00019565-protein|Name=TCONS_00019565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=788bp MDGEYDKCPESPMSREQGNSVIPKMYRKVEIKYSKYGVEGFNFKHYNQTPRun BLAST on NCBI transcript from alignment at sc0000331:103634..123651+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019565 ID=TCONS_00019565|Name=TCONS_00019565|organism=Clytia hemisphaerica|type=transcript|length=20018bp|location=Sequence derived from alignment at sc0000331:103634..123651+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000331:103634..123651+ >TCONS_00019565 ID=TCONS_00019565|Name=TCONS_00019565|organism=Clytia hemisphaerica|type=CDS|length=44973bp|location=Sequence derived from alignment at sc0000331:103634..123651+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019565 vs. Swiss-Prot (Human)
Match: PAN2 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens GN=PAN2 PE=1 SV=3) HSP 1 Score: 421.394 bits (1082), Expect = 5.644e-129 Identity = 247/554 (44.58%), Postives = 342/554 (61.73%), Query Frame = 2
Query: 893 SGVKSLFGMDLLSCRTCRCGDSEERKGTIFSLDLVYPDIKAYDE-DEIYPFGQLLQESVIRQERNPSWCNKCKKYQSTQHHRKVVSIPDVLNINCQLERDSNLKFWKKQMQLASPKPSISSMKSNLHHSPPKICRYGKFCNRPECKFVHPGRDGEPKLSSSDADGGLGANLSWLPLFIEVKHNKKTMGVEIKNYVHDEEL------APEGQ---VYRLVSNVCHIKDNTMGTTLVSHILVSKRYHQRKEVEDQLEKSAEQWYVFNDFAITPVSEVEAVSFNLDWKQPCVLMYARADLEEIHTAQCTSKIPSSVLFADKSLALKQARFARSFTPLNASEILKADDVVGIDAEFVTLNQEESEMKSDGTLSTLRPSQMSVARITVVRGWGPLEGVPFIDDYISTSEQVVDYLTKFSGIKPGDLDVXXXXXXXXXXXXXYQKLRYLSDLKVILVGHGLKKDFRVINLVIPRDQVIDTVELFHLNKQRYVSLKFLAWHFLNIKIQAGTHDSAEDAYTAXXXXXXXXXXXXAGE--YVLQEELEILYETGRQYNWQVPE 2518
S + LF ++ +C CRCG R + L YPD D+ + Y F Q+L+ S+ + +WC+ C+KYQ T R + +PD+L INC++ FW+ Q ++A K ++ + + K PE V P + + WLP I +K K G+++ N+ +E+ A E VY L++ V HI D+ G +LV+HI V + YHQRKE + +QWY+FNDF I P+ + EAV F+++WK P +L Y + +L + + I +SVL A+ SLA KQ + +F PL +E+ + D+VG+DAEFVTLN+EE+E++SDGT ST++PSQMSVARIT VRG GP EG+PFIDDYIST EQVVDYLT++SGIKPGDLD SSKHLTTLK++Y KLR+L D+ V VGHGL+KDFRVINL++P+DQV+DTV LFH+ ++R +SL+FLAW+FL++KIQ THDS EDA TAL+LY KY EL G + L+ LYE GR+ +W+VPE
Sbjct: 651 SVIGQLFSCEMENCSLCRCGSETVRASSTLLFTLSYPDGSKSDKTGKNYDFAQVLKRSICLDQNTQAWCDTCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRMQAEVAF-KMAVKKHGGEISKNKEFALADWKELGSPEGVLVCPSIEELKNV--------------WLPFSIRMKMTKNK-GLDVCNWTDGDEMQWGPARAEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKE-----GVTHQQWYLFNDFLIEPIDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFIPLMLNEMPQIGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPE 1183 HSP 2 Score: 213.386 bits (542), Expect = 6.586e-57 Identity = 98/165 (59.39%), Postives = 123/165 (74.55%), Query Frame = 2
Query: 158 DGEYD---KCPESPMSREQGNSV--IPKMYRKVEIKYSKYGVEGFNFKHYNQTPFSGLEIHIPNAYCNCMIQLMYFLEPLRVTICNHLCQEEFCLTCELSFLFHMLDIADNQTCQATNFLRTFRTLPEVSALGLLKSDNYNPSRSGGMMQIIQNWNRFVIRQLHQ 637
D E+D + ESP+ RE+ + + K YRKV IKYSK G+E F+FKHYN+T F+GLE HIPNAYCNCMIQ++YFLEP+R I NHLCQ+EFCL CEL FLFHMLD++ CQ NFLR FRT+PE SALGL+ +D+ S G + ++IQ WNRF++ QLHQ
Sbjct: 462 DSEFDSFSQVTESPVGREEEPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPVRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGNNFLRAFRTIPEASALGLILADSDEASGKGNLARLIQRWNRFILTQLHQ 626 The following BLAST results are available for this feature:
BLAST of TCONS_00019565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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